View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_low_249 (Length: 231)
Name: NF9388A_low_249
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_249 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 20816611 - 20816837
Alignment:
| Q |
1 |
ggcgtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagttacaataatgatcttcagccgcagacctatcctgaaattttgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20816611 |
ggcgtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgag |
20816710 |
T |
|
| Q |
101 |
atctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20816711 |
atctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatg |
20816810 |
T |
|
| Q |
201 |
cgcgctttggaagtgttgaattacttg |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
20816811 |
cgcgctttggaagtgttgaattacttg |
20816837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 38779532 - 38779308
Alignment:
| Q |
3 |
cgtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagttacaataatgatcttcagccgcagacctatcctgaaattttgagat |
102 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38779532 |
cgtgctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagat |
38779433 |
T |
|
| Q |
103 |
ctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcg |
202 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
38779432 |
ctaatcttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcg |
38779333 |
T |
|
| Q |
203 |
cgctttggaagtgttgaattacttg |
227 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38779332 |
tgctttggaagtgttgaattacttg |
38779308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 33388491 - 33388268
Alignment:
| Q |
3 |
cgtgctggaagaacacaaccagggaaatgctttagactttatacggaaagaagttacaataatgatcttcagccgcagacctatcctgaaattttgagat |
102 |
Q |
| |
|
||||| |||||||| ||||| |||||||||| |||||| ||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388491 |
cgtgccggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagat |
33388392 |
T |
|
| Q |
103 |
ctaatctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcg |
202 |
Q |
| |
|
||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
33388391 |
ctaatcttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcg |
33388292 |
T |
|
| Q |
203 |
cgctttggaagtgttgaattactt |
226 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33388291 |
tgctttggaagtgttgaattactt |
33388268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University