View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_254 (Length: 230)
Name: NF9388A_low_254
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_254 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 7286109 - 7286332
Alignment:
| Q |
7 |
gttaagaggtataacttatttgctaataacaatcttagtgatttaatagtctaaatgaacagtgttataaacgtaatatgataattaattttttatattg |
106 |
Q |
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| T |
7286109 |
gttaagaggtataacttatttgctaataacaatcttagtgatttaatagtctaaatgaacggtgttataaacgtaatatgataattaattttttatatta |
7286208 |
T |
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| Q |
107 |
tcaacaaacttattgacttgattcaaatctgaaacatattctatattgggcattctcctactaaccatgatgctcaacaattttctagtttaactaagaa |
206 |
Q |
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| T |
7286209 |
ttaacaaacttattgacttgattcaaatctgaaacatattctatattgggcattctcctactaaccatgatactcaacaattttctagtctaaataagaa |
7286308 |
T |
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| Q |
207 |
aacaattaatctcaatcaaagttg |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
7286309 |
aacaattaatctcaatcaaagttg |
7286332 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 16336290 - 16336229
Alignment:
| Q |
8 |
ttaagaggtataacttatttgctaataacaatcttagtgatttaatagtctaaatgaacagt |
69 |
Q |
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||||||||||||||||||||||| ||||||||| || |||||||||| | ||| |||||||| |
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| T |
16336290 |
ttaagaggtataacttatttgcttataacaatcataatgatttaatattttaattgaacagt |
16336229 |
T |
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