View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_257 (Length: 230)
Name: NF9388A_low_257
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_257 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 9813834 - 9813612
Alignment:
| Q |
7 |
cttttatccaaataattcagtttcaatttaggcttaattatgcactcttcatgtctttcattctgaagttattttccaagttgatcgaatcagtcatcca |
106 |
Q |
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| T |
9813834 |
cttttatccaaataattcagtttcagtttaggcttaattatgcactcttcatatctttcattctgaagttattttccaagtcgatcgaatcaatcatcca |
9813735 |
T |
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| Q |
107 |
ttaaattataaagcaaaatattcatannnnnnnataagcgaagaaatttcggtaaacagaatccaaggagtacttgagcctaatacaaatcgtcaagtca |
206 |
Q |
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| T |
9813734 |
taaaattataaagcaaaatattcata-ttttttataagcaaagaaatttcactaaacagaatacaaggagtactcaaacctaatacaaatcgtcaagtca |
9813636 |
T |
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| Q |
207 |
tatacaatgataacattaagatgg |
230 |
Q |
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| T |
9813635 |
tatacaatgataacattaagatgg |
9813612 |
T |
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