View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_258 (Length: 230)
Name: NF9388A_low_258
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_258 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0096 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 41 - 230
Target Start/End: Complemental strand, 12535177 - 12534988
Alignment:
| Q |
41 |
atctatttgtgtcgtgtgctcaatgctgcaaacaaatcacacataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttg |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12535177 |
atctatttgtgtcgtgtgctcaatgctgcaaacaaatcacacataatcttcacaaagagagaaagaatatgactgctgatataatttggtttgatatttg |
12535078 |
T |
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| Q |
141 |
aaattataacgatttgagaagaaaagcaactgaagtattcattccaccattgatgccacagtttgatgccgcattctacctttaacttga |
230 |
Q |
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| T |
12535077 |
aaattataacgatttgagaataaacgcaactgaagtattcattccaccattgatgccgcagtttgatgccgcattctacctttaacttga |
12534988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 76 - 230
Target Start/End: Complemental strand, 12534154 - 12534000
Alignment:
| Q |
76 |
atcacacataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttgaaattataacgatttgagaagaaaagcaactgaag |
175 |
Q |
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| T |
12534154 |
atcacacataatcttcacaaagagagaaagaatatgactgctgatataatttggtttgatatttgaaattataacgatttgagaataaacgcaactgaag |
12534055 |
T |
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| Q |
176 |
tattcattccaccattgatgccacagtttgatgccgcattctacctttaacttga |
230 |
Q |
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| T |
12534054 |
tattcattccaccattgatgccgcagtttgatgccgcattctacctttaacttga |
12534000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 29333 - 29489
Alignment:
| Q |
41 |
atctatttgtgtcgtgtgctcaatgctgcaaacaaatcacacataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttg |
140 |
Q |
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|||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29333 |
atctatttgtgttgtgtgctcaatgctgccaacatatcacacataatcttcacaaagagagaaagaatatgactgctgatataatttggtttgatatttg |
29432 |
T |
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| Q |
141 |
aaattataacgatttgagaagaaaagcaactgaagtattcattccaccattgatgcc |
197 |
Q |
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| T |
29433 |
aaattataacgatttgagaataaacgcaactgaagtattcattccaccattgatgcc |
29489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 22914561 - 22914703
Alignment:
| Q |
81 |
acataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttgaaattataacgatttgagaagaaaagcaactgaagtattc |
180 |
Q |
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| T |
22914561 |
acataatattcacaaagagagaaagaatatgactgctgatataatttggtttgaaattt-------taacgatttgagaagaaatgtaactgatgtattc |
22914653 |
T |
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| Q |
181 |
attccaccattgatgccacagtttgatgccgcattctacctttaacttga |
230 |
Q |
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| T |
22914654 |
attccaccattgatgccgtgatttgatgcagtactctacctttaacttga |
22914703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 13594099 - 13594241
Alignment:
| Q |
81 |
acataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttgaaattataacgatttgagaagaaaagcaactgaagtattc |
180 |
Q |
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||||||| |||| ||||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||| | |||||| |||||| |
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| T |
13594099 |
acataatattcaaaaagagagaaacaatatgactgctgatataatttggtttgaaattt-------taacgatttgagaagaaatgtaactgatgtattc |
13594191 |
T |
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| Q |
181 |
attccaccattgatgccacagtttgatgccgcattctacctttaacttga |
230 |
Q |
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| T |
13594192 |
attccaccattgatgccgcgatttgatgcagcactttacctttaacttga |
13594241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 29687277 - 29687419
Alignment:
| Q |
81 |
acataatcttcacaaagagagaaagaatatgactgctaatataatttggtttgatatttgaaattataacgatttgagaagaaaagcaactgaagtattc |
180 |
Q |
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||||||| |||||||||||||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||||| | |||||| |||||| |
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| T |
29687277 |
acataatattcacaaagagagaaacaatatgactgctgatataatttggtttgaaattt-------taacgatttgagaagaaatgtaactgatgtattc |
29687369 |
T |
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| Q |
181 |
attccaccattgatgccacagtttgatgccgcattctacctttaacttga |
230 |
Q |
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| T |
29687370 |
attccaccattgatgccgcgatttgatgcagcactttacctttaacttga |
29687419 |
T |
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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 2300382 - 2300514
Alignment:
| Q |
98 |
agagaaagaatatgactgctaatataatttggtttgatatttgaaattataacgatttgagaagaaaagcaactgaagtattcattccaccattgatgcc |
197 |
Q |
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|||||||||||||| ||| | |||||||||||||||| |||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
2300382 |
agagaaagaatatggctgttgatataatttggtttgaaatttgaaattttaatgatttgggaagaaacataactgaagtattcattccaccattgatgcc |
2300481 |
T |
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| Q |
198 |
acagtttgatgccgcattctacctttaacttga |
230 |
Q |
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| T |
2300482 |
gcgatttaacaccgcaatctacctttaacttga |
2300514 |
T |
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