View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_26 (Length: 427)
Name: NF9388A_low_26
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 5 - 406
Target Start/End: Original strand, 219733 - 220134
Alignment:
| Q |
5 |
tgagatgaaatttgattttaaggaatattaaatgtgtaggagtttgtgaaggcagtgattgcttatcagaaaaggttgaatactttaacatcaatgccaa |
104 |
Q |
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| T |
219733 |
tgagatgaaatttgattttgaggaatattaaatgtgtaggagtttgtgaaggcagtgattgcttttcagaaaaggctgaatactttaacatcagtgccaa |
219832 |
T |
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| Q |
105 |
aacctatgaaactaaacaaggaaatcaagaacaaaaggaggattataatgcgcaccttttcagttgcaacaaacctatacactaccggccgtgggaactg |
204 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||||| |||||||| || |
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| T |
219833 |
aacgtatgaaactaaacaaggaaatcaagaacaaaaggaggattataatgcgtagcttttcagttgcaaaaaaactatacactaccggtcgtgggaaatg |
219932 |
T |
|
| Q |
205 |
ttcttccaaagagcgggagcttgaagctggagccaaatttctcgaggtaacaaattataaacacaattaatcacaatcgcggatatagtcgcattcgcaa |
304 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
219933 |
ttcttccaaagagtgggagcttgaagctggagccaaatttctcgaggtaacaaattataaacacaattaatcacaatcgcagatatagtcgcattcgcga |
220032 |
T |
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| Q |
305 |
agaattgcaattaatcgtggtttatataatctcaattatggttgtagaattataaaaattgacgatgttccaaatcgtcaattatgatagtgaatgagtt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
220033 |
agaattgcaattaatcgtggtttatataatctcaattatggttgtagaattataaaaattgacgatgttccaaatcgtcaattatgatagtgaatgagtt |
220132 |
T |
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| Q |
405 |
ag |
406 |
Q |
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|| |
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| T |
220133 |
ag |
220134 |
T |
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