View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_261 (Length: 230)

Name: NF9388A_low_261
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_261
NF9388A_low_261
[»] chr2 (7 HSPs)
chr2 (73-220)||(31613156-31613309)
chr2 (72-210)||(31608652-31608794)
chr2 (1-46)||(31613084-31613129)
chr2 (72-113)||(31619297-31619338)
chr2 (72-142)||(31624067-31624133)
chr2 (7-39)||(31619235-31619267)
chr2 (72-142)||(31605386-31605455)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 31613156 - 31613309
Alignment:
Q  73 gcacattttctgaagagaaattaacaacaaatattgttatattcatcattcatgta------tactgtccaatgattataaaatctattgatctcaaatt 166  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||      |||||||||||||||||||||||||||||||||| |||    
T  31613156 gcacattttctgaagagaaattaacaacaaatatagttatattcatgattcatgtatgtgtatactgtccaatgattataaaatctattgatctcagatt 31613255  T
Q  167 agtttcttaattaaactggttgctaaataaatttttaacgtgtttagagataac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31613256 agtttcttaattaaactggttgctaaataaatttttaacgtgtttagagataac 31613309  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 31608652 - 31608794
Alignment:
Q  72 agcacattttctgaagagaaattaacaacaaatattgttatattcatcattcatgtatactgtccaatgatt----ataaaatctattgatctcaaatta 167  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||    |||||||||||||||| |||||||    
T  31608652 agcacattttctgaagagaaattaacaataaatatagttatattcgtcattcatgtatactgtccaatgattataaataaaatctattgatcccaaatta 31608751  T
Q  168 gtttcttaattaaactggttgctaaataaatttttaacgtgtt 210  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  31608752 gtatcttaattaaactggttgctaaataaatttttaacgtgtt 31608794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31613084 - 31613129
Alignment:
Q  1 aatcccccgcttcctgtgctacccattggtttctttccagcagcaa 46  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||    
T  31613084 aatcctccgcttcctgtgctacccatcggtttctttccagcagcaa 31613129  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 31619297 - 31619338
Alignment:
Q  72 agcacattttctgaagagaaattaacaacaaatattgttata 113  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  31619297 agcacattttctgaagagaaattaacaacaaatatagttata 31619338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 31624067 - 31624133
Alignment:
Q  72 agcacattttctgaagagaaattaacaacaaatattgttatattcatcattcatgtatactgtccaatgat 142  Q
    |||||||||||||||||||||    |||||||||| ||||||||||| ||||||||||| || ||||||||    
T  31624067 agcacattttctgaagagaaa----caacaaatatagttatattcatgattcatgtatattgcccaatgat 31624133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 31619235 - 31619267
Alignment:
Q  7 ccgcttcctgtgctacccattggtttctttcca 39  Q
    |||||||||||||||||||||||||||||||||    
T  31619235 ccgcttcctgtgctacccattggtttctttcca 31619267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 31605386 - 31605455
Alignment:
Q  72 agcacattttctgaagagaaattaacaacaaatattgttatattc---atcattcatgtatactgtccaatgat 142  Q
    |||||||||||||||||||    |||||||||||| |||||||||   ||||||||| |||| |||||||||||    
T  31605386 agcacattttctgaagaga----aacaacaaatatagttatattcaatatcattcatctatattgtccaatgat 31605455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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