View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_264 (Length: 230)

Name: NF9388A_low_264
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_264
NF9388A_low_264
[»] chr5 (5 HSPs)
chr5 (51-170)||(32268817-32268936)
chr5 (27-162)||(41900181-41900316)
chr5 (11-83)||(32268755-32268825)
chr5 (102-169)||(41886279-41886346)
chr5 (35-84)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (28-95)||(15091347-15091414)
chr7 (31-93)||(10168806-10168868)
chr7 (31-93)||(10176331-10176393)
chr7 (115-156)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (28-89)||(2460597-2460658)
chr4 (34-107)||(2367656-2367729)
chr4 (40-89)||(2547544-2547593)
chr4 (34-86)||(2381378-2381430)
chr4 (28-88)||(6007665-6007725)
chr4 (34-92)||(566629-566687)
chr4 (34-87)||(2525763-2525816)
chr4 (40-85)||(12124836-12124881)
chr4 (40-85)||(12126892-12126937)
chr4 (28-93)||(55907434-55907499)
chr4 (34-86)||(2486313-2486365)
chr4 (34-86)||(5035628-5035680)
chr4 (28-74)||(1547469-1547515)
chr4 (42-92)||(2376228-2376278)
chr4 (48-86)||(2380123-2380161)
chr4 (40-89)||(2472104-2472153)
chr4 (55-95)||(8445271-8445311)
chr4 (35-75)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (28-95)||(513426-513493)
chr3 (42-93)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (34-94)||(14821628-14821688)
chr6 (34-86)||(6395781-6395833)
chr6 (38-86)||(6427432-6427480)
chr6 (40-74)||(6437161-6437195)
chr6 (34-76)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (34-93)||(32152212-32152271)
chr8 (40-86)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (28-93)||(1036176-1036241)
chr2 (40-93)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (34-83)||(15837967-15838016)
chr1 (34-93)||(33161439-33161498)
chr1 (42-86)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 32268817 - 32268936
Alignment:
Q  51 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaga 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32268817 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaa 32268916  T
Q  151 tatgaaccagaaatcattga 170  Q
    ||||||||||||||||||||    
T  32268917 tatgaaccagaaatcattga 32268936  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 41900316 - 41900181
Alignment:
Q  27 aagagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagaca 126  Q
    |||||| |||||||||  ||||||||||||||| ||||||||||||||||  ||||||||||||||| |  |||| | |||||| | |||||||||||||    
T  41900316 aagagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtagtgattatcgtctttgaggaatttgaagaca 41900217  T
Q  127 cattcccaacactcatctggtagatatgaaccagaa 162  Q
    |||||||||||||||||||||| |||||||||||||    
T  41900216 cattcccaacactcatctggtaaatatgaaccagaa 41900181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 32268755 - 32268825
Alignment:
Q  11 ggatcatagactgtgaaagagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 83  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268755 ggatcatagactgtgagagaga--atcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 41886346 - 41886279
Alignment:
Q  102 gttgtctttcaagaatttgaagacacattcccaacactcatctggtagatatgaaccagaaatcattg 169  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| |||  |||||  ||||||||    
T  41886346 gttgtctttcaggaatttgaagacacattcccaacactcatcaggtaaatagaaaccaccaatcattg 41886279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 12846943 - 12846992
Alignment:
Q  35 atcgaagacggttggtgatggagagtaactgtttggagacgatggagaga 84  Q
    |||| |||||||||||||||||||| ||||| ||||| |||| |||||||    
T  12846943 atcggagacggttggtgatggagaggaactgcttggaaacgagggagaga 12846992  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 15091414 - 15091347
Alignment:
Q  28 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagca 95  Q
    ||||| ||| |||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  15091414 agagaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 10168868 - 10168806
Alignment:
Q  31 gataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 93  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||| ||||| ||||||    
T  10168868 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 10176393 - 10176331
Alignment:
Q  31 gataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 93  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||| ||||| ||||||    
T  10176393 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
Q  115 aatttgaagacacattcccaacactcatctggtagatatgaa 156  Q
    |||||||||| |||||||||||||||||| |||| |||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 2460597 - 2460658
Alignment:
Q  28 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagattt 89  Q
    ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  2460597 agagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagattt 2460658  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 2367729 - 2367656
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtc 107  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| |||| || |||| | || ||||||||    
T  2367729 aatcggagacggttggtgatggagagaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtc 2367656  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 2547544 - 2547593
Alignment:
Q  40 agacggttggtgatggagagtaactgtttggagacgatggagagagattt 89  Q
    ||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  2547544 agacggttggtgatggacagaaactgtttggagacgatggagagcgattt 2547593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 2381430 - 2381378
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 86  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||| |||||    
T  2381430 aatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 2381378  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 6007665 - 6007725
Alignment:
Q  28 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatt 88  Q
    ||||| ||||| |||| ||||||||||||||| |||||||| ||||||| |||||||||||    
T  6007665 agagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 566629 - 566687
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaa 92  Q
    |||||||||| || |||||||||||| |||||||||||||| | ||||||||| |||||    
T  566629 aatcgaagactgtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 566687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 2525763 - 2525816
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagat 87  Q
    |||||||||| |||||||||||| || |||||||| ||||||| ||||||||||    
T  2525763 aatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 12124836 - 12124881
Alignment:
Q  40 agacggttggtgatggagagtaactgtttggagacgatggagagag 85  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  12124836 agacggttggtgatggagagaaattgtttggagacaatggagagag 12124881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 12126892 - 12126937
Alignment:
Q  40 agacggttggtgatggagagtaactgtttggagacgatggagagag 85  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  12126892 agacggttggtgatggagagaaattgtttggagacaatggagagag 12126937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 55907499 - 55907434
Alignment:
Q  28 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 93  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  55907499 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 2486313 - 2486365
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 86  Q
    ||||| ||||||||||||||||| || |||||||| ||||||| |||||||||    
T  2486313 aatcggagacggttggtgatggacagaaactgttttgagacgagggagagaga 2486365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 5035628 - 5035680
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 86  Q
    |||||||||||||||||||||||||| |||||||| || |||| ||| |||||    
T  5035628 aatcgaagacggttggtgatggagagaaactgttttgaaacgaaggaaagaga 5035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 1547515 - 1547469
Alignment:
Q  28 agagataatcgaagacggttggtgatggagagtaactgtttggagac 74  Q
    ||||| ||||| |||||||||||||||||||| || |||||||||||    
T  1547515 agagagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 2376278 - 2376228
Alignment:
Q  42 acggttggtgatggagagtaactgtttggagacgatggagagagatttcaa 92  Q
    |||||||||||||||||| ||   ||||||||||||||||||||| |||||    
T  2376278 acggttggtgatggagagaaaagttttggagacgatggagagagacttcaa 2376228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 2380161 - 2380123
Alignment:
Q  48 ggtgatggagagtaactgtttggagacgatggagagaga 86  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  2380161 ggtgatcgagagtaactgtttggagacgatggaaagaga 2380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 2472104 - 2472153
Alignment:
Q  40 agacggttggtgatggagagtaactgtttggagacgatggagagagattt 89  Q
    ||||| |||||||||||||  |||||||||||||| ||||| ||||||||    
T  2472104 agacgattggtgatggagaaaaactgtttggagaccatggaaagagattt 2472153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 8445311 - 8445271
Alignment:
Q  55 gagagtaactgtttggagacgatggagagagatttcaagca 95  Q
    |||||||||||||| ||||||||||||||||| || |||||    
T  8445311 gagagtaactgttttgagacgatggagagagactttaagca 8445271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 12121049 - 12121009
Alignment:
Q  35 atcgaagacggttggtgatggagagtaactgtttggagacg 75  Q
    ||||||||||||||||||||||||| ||||| || ||||||    
T  12121049 atcgaagacggttggtgatggagaggaactgctttgagacg 12121009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 513493 - 513426
Alignment:
Q  28 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagca 95  Q
    ||||| ||||| |||  |||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  513493 agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 51763197 - 51763146
Alignment:
Q  42 acggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 93  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||| ||||||    
T  51763197 acggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaag 51763146  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 14821628 - 14821688
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagc 94  Q
    ||||||||||| |||||||| ||||| ||||| |||||||||| ||||||| |||||||||    
T  14821628 aatcgaagacgattggtgatagagaggaactgcttggagacgagggagagacatttcaagc 14821688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 6395781 - 6395833
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 86  Q
    ||||||||| | |||||||||||||| ||||| |||||||||| |||||||||    
T  6395781 aatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 6427432 - 6427480
Alignment:
Q  38 gaagacggttggtgatggagagtaactgtttggagacgatggagagaga 86  Q
    ||||||| |||||||||||||| ||||| |||||||||| |||||||||    
T  6427432 gaagacgattggtgatggagaggaactgcttggagacgagggagagaga 6427480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 6437161 - 6437195
Alignment:
Q  40 agacggttggtgatggagagtaactgtttggagac 74  Q
    |||||||||||||||||||| ||||||||||||||    
T  6437161 agacggttggtgatggagaggaactgtttggagac 6437195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 7993361 - 7993319
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacga 76  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||    
T  7993361 aatcggagacggctggtgatggagaggaactgtttggagacga 7993319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 32152212 - 32152271
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 93  Q
    ||||| |||| ||||||||||||||| |||||||||||||||| |||||| || ||||||    
T  32152212 aatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 39516869 - 39516915
Alignment:
Q  40 agacggttggtgatggagagtaactgtttggagacgatggagagaga 86  Q
    |||||||||||||||| ||| || ||| |||||||||||||||||||    
T  39516869 agacggttggtgatggcgagaaattgtctggagacgatggagagaga 39516915  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 1036241 - 1036176
Alignment:
Q  28 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 93  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  1036241 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 44575230 - 44575177
Alignment:
Q  40 agacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 93  Q
    ||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  44575230 agacgattggtgattgagagaaactgttttgagacgatggagagagacttcaag 44575177  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 15838016 - 15837967
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 83  Q
    ||||| |||||||||||||||||||| |||||||||||||| || |||||    
T  15838016 aatcggagacggttggtgatggagagaaactgtttggagaccatcgagag 15837967  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 33161439 - 33161498
Alignment:
Q  34 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 93  Q
    ||||||||||  || ||||||||||| |||||||||||||||| ||| ||||| ||||||    
T  33161439 aatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 52085556 - 52085600
Alignment:
Q  42 acggttggtgatggagagtaactgtttggagacgatggagagaga 86  Q
    ||||||||||||||| || |||| ||||||||||||||| |||||    
T  52085556 acggttggtgatggaaaggaactttttggagacgatggaaagaga 52085600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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