View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_271 (Length: 229)
Name: NF9388A_low_271
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_271 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28976362 - 28976139
Alignment:
| Q |
1 |
ttgatatattcatgatgagtttggtccactagtagcctacaaatgcacaccatgcccatagggaagccgagatattcttatcaacttcgtgctacttttt |
100 |
Q |
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| T |
28976362 |
ttgatatattcatgatgagtttgatccactagtagcctacaaatgcacaccatgcccatagggaagtcgagatatttttatcaacttcgtgctacttttt |
28976263 |
T |
|
| Q |
101 |
gttggttcttgacctcttagacatcgcttttgtacgttgtaaatgcgatttgttcttagctccattaactctaggctatggttcattagaaaattggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28976262 |
attggttcttgacctcttagacatcgcttttgtacgttgtaaatgcgatttgttcttagctccattaactctaggctatggttcattggaaaattggaat |
28976163 |
T |
|
| Q |
201 |
agaatggtgaaatatgtactagtt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
28976162 |
agaatggtgaaatatgtactagtt |
28976139 |
T |
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