View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_274 (Length: 228)
Name: NF9388A_low_274
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_274 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 44826745 - 44826518
Alignment:
| Q |
1 |
gtcttaatggttattgctgtgaaaaatattgtgggtatgtcaattttcatttaattatgttacttttcgatggaaaacaactatgttttcaatgtgatca |
100 |
Q |
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| T |
44826745 |
gtcttaatggtttttgctgtgaaaaatattgtgggtatgtcaattttcatttaattatgttacttttcgatggaaaacaactatgttttcaatgtgatca |
44826646 |
T |
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| Q |
101 |
gttatattttctaccttcaggtgttcaaagctctgtaaaaatctatttggaggatgtcagtgtactaagagtcagtgtagaagtcgacactgtccatgtt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44826645 |
gttatattttttaccttcaggtgttcaaagctctgtaaaaatcgatttggaggatgtcagtgtactaagagtcagtgtagaagtcgacactgtccatgtt |
44826546 |
T |
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| Q |
201 |
ttgcagcttcaagagattgtgaccctga |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
44826545 |
ttgcagcttcaagagattgtgaccctga |
44826518 |
T |
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