View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_279 (Length: 225)

Name: NF9388A_low_279
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_279
NF9388A_low_279
[»] chr8 (1 HSPs)
chr8 (1-219)||(3459638-3459857)
[»] scaffold0479 (1 HSPs)
scaffold0479 (5-44)||(4933-4972)
[»] chr1 (2 HSPs)
chr1 (2-40)||(14255186-14255224)
chr1 (1-53)||(4601642-4601694)
[»] scaffold0464 (1 HSPs)
scaffold0464 (5-54)||(11399-11448)
[»] scaffold0092 (1 HSPs)
scaffold0092 (3-52)||(21775-21824)
[»] chr3 (1 HSPs)
chr3 (5-53)||(12731720-12731768)
[»] chr7 (2 HSPs)
chr7 (2-52)||(13292279-13292329)
chr7 (149-217)||(18818075-18818142)
[»] scaffold0205 (1 HSPs)
scaffold0205 (2-51)||(11071-11120)
[»] chr5 (1 HSPs)
chr5 (2-42)||(22865656-22865696)
[»] chr4 (1 HSPs)
chr4 (4-44)||(16012628-16012668)
[»] chr2 (1 HSPs)
chr2 (1-49)||(10923320-10923368)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 3459638 - 3459857
Alignment:
Q  1 agagcattctctgccgccgttgctactcgaccgttctcaccggagagatcaatgatataatacatatagtttttatacagagaatttaaagnnnnnnnnn 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  | |||||||||             
T  3459638 agagcattctctgccgccgttgctactcggccgttctcaccggagagatcaatgatataatacatatagtttttaaaccaaaaatttaaagaaaaaaa-- 3459735  T
Q  101 nnnntgttctctcc-------gttaaattcttcccactaaaatgacaagaaaattaatgaggccctaccaaatgagaatgtcttgagagttttagaaggc 193  Q
        ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3459736 ----tgttctctcctgagatcgttaaattcttcccactaaaatgacaagaaaattaatgaggccctaccaaatgaaaatgtcttgagagttttagaaggc 3459831  T
Q  194 actataatgatcattagggtaggtac 219  Q
    ||||||||||||||||||||||||||    
T  3459832 actataatgatcattagggtaggtac 3459857  T

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Target: scaffold0479 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 4972 - 4933
Alignment:
Q  5 cattctctgccgccgttgctactcgaccgttctcaccgga 44  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  4972 cattctctgccgccgttgctactcaaccgttctcaccgga 4933  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 14255186 - 14255224
Alignment:
Q  2 gagcattctctgccgccgttgctactcgaccgttctcac 40  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  14255186 gagcattctctgccgccgttgctactcaaccgttctcac 14255224  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4601642 - 4601694
Alignment:
Q  1 agagcattctctgccgccgttgctactcgaccgttctcaccggagagatcaat 53  Q
    |||||||| |||||| |||||||||||| |||||||||||| || ||||||||    
T  4601642 agagcattttctgccaccgttgctactcaaccgttctcaccagacagatcaat 4601694  T

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Target: scaffold0464 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 11448 - 11399
Alignment:
Q  5 cattctctgccgccgttgctactcgaccgttctcaccggagagatcaatg 54  Q
    ||||||||||||| |||||||||| |||||||||||||||  ||||||||    
T  11448 cattctctgccgctgttgctactcaaccgttctcaccggaccgatcaatg 11399  T

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Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 21775 - 21824
Alignment:
Q  3 agcattctctgccgccgttgctactcgaccgttctcaccggagagatcaa 52  Q
    ||||||||||||| ||||||| ||||| |||||||||||||| |||||||    
T  21775 agcattctctgccaccgttgcgactcggccgttctcaccggacagatcaa 21824  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 12731720 - 12731768
Alignment:
Q  5 cattctctgccgccgttgctactcgaccgttctcaccggagagatcaat 53  Q
    ||||||||||||| |||||||||| |||||||||||||||  |||||||    
T  12731720 cattctctgccgctgttgctactcaaccgttctcaccggaccgatcaat 12731768  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 13292279 - 13292329
Alignment:
Q  2 gagcattctctgccgccgttgctactcgaccgttctcaccggagagatcaa 52  Q
    |||||||||||||||||||||  |||||||||||||| || || |||||||    
T  13292279 gagcattctctgccgccgttgtcactcgaccgttctcgccagacagatcaa 13292329  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 18818075 - 18818142
Alignment:
Q  149 aatgaggccctaccaaatgagaatgtcttgagagttttagaaggcactataatgatcattagggtaggt 217  Q
    |||||||||| ||||||  ||||||| ||||||| |||  |||| |||| |||||||||||||||||||    
T  18818075 aatgaggccccaccaaagaagaatgt-ttgagagatttgtaaggaactaaaatgatcattagggtaggt 18818142  T

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Target: scaffold0205 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 11071 - 11120
Alignment:
Q  2 gagcattctctgccgccgttgctactcgaccgttctcaccggagagatca 51  Q
    ||||||||| |||| ||||||| |||| ||||||||||||||| ||||||    
T  11071 gagcattctttgccaccgttgcgactcaaccgttctcaccggatagatca 11120  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 22865696 - 22865656
Alignment:
Q  2 gagcattctctgccgccgttgctactcgaccgttctcaccg 42  Q
    ||||||||||||||||||||||||||| |  ||||||||||    
T  22865696 gagcattctctgccgccgttgctactcaattgttctcaccg 22865656  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 16012628 - 16012668
Alignment:
Q  4 gcattctctgccgccgttgctactcgaccgttctcaccgga 44  Q
    |||||||||||| ||||||| |||| |||||||||||||||    
T  16012628 gcattctctgccaccgttgccactcaaccgttctcaccgga 16012668  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10923320 - 10923368
Alignment:
Q  1 agagcattctctgccgccgttgctactcgaccgttctcaccggagagat 49  Q
    ||||||||||||||||| ||||| |||| ||| ||||||||||| ||||    
T  10923320 agagcattctctgccgcagttgccactcaaccattctcaccggacagat 10923368  T

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