View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_282 (Length: 224)
Name: NF9388A_low_282
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_282 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 39941085 - 39940875
Alignment:
| Q |
14 |
gaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgata |
113 |
Q |
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| T |
39941085 |
gaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgata |
39940986 |
T |
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| Q |
114 |
ctcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggacatctcatcaagttgttaatcgg |
213 |
Q |
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| T |
39940985 |
ctcacgactattgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcgg |
39940886 |
T |
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| Q |
214 |
aggattcgacg |
224 |
Q |
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| T |
39940885 |
aggtttcgacg |
39940875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 39956731 - 39956556
Alignment:
| Q |
49 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttctg |
148 |
Q |
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| T |
39956731 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctg |
39956632 |
T |
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| Q |
149 |
ccacgaaggaacagattttccttcaaaccccttttcaacggacatctcatcaagttgttaatcggaggattcgacg |
224 |
Q |
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| T |
39956631 |
ccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgacg |
39956556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 28741849 - 28742020
Alignment:
| Q |
15 |
aaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
114 |
Q |
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| T |
28741849 |
aaccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaacgtgaacattaccgacaacatgagac |
28741948 |
T |
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| Q |
115 |
tcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaa |
186 |
Q |
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| T |
28741949 |
tcacgaataatgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccctttttcaa |
28742020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 28750694 - 28750886
Alignment:
| Q |
15 |
aaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
114 |
Q |
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| T |
28750694 |
aaccctaacaatccagcagaaacattcaacgaaggaataatcccagttgtgagattcaacttcatcacgataaacgtgaacatcaccgacaacatgagac |
28750793 |
T |
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| Q |
115 |
tcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggacatctcatcaagttgtt |
207 |
Q |
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| T |
28750794 |
tcgcaaatattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgtt |
28750886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 7963656 - 7963790
Alignment:
| Q |
18 |
cctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactga-taacatgatactc |
116 |
Q |
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| T |
7963656 |
cctaacaacccagcaaaaacattcaacgaatgaataatcccagttgtgagattcagattcatcatgatgaatgtgaacatcatcgaccaacatgagactc |
7963755 |
T |
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| Q |
117 |
actactattgccctaaccgtaacctgtttctgcca |
151 |
Q |
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| T |
7963756 |
acgaatataggcctaaccataacatttttctgcca |
7963790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 7961143 - 7961298
Alignment:
| Q |
28 |
cagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgc |
127 |
Q |
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| T |
7961143 |
cagcagaaacatttaatgaaggaataattccagttgtgagattgagcttcatcacgatgaatgtgaacattaccgtcaaaacgagactcacgaatatagc |
7961242 |
T |
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| Q |
128 |
cctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaacccctttt |
183 |
Q |
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| T |
7961243 |
cataaccgtgacattttggtgccacataggaactgattttccttcaaacccttttt |
7961298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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