View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_283 (Length: 224)
Name: NF9388A_low_283
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_283 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 11989 - 12178
Alignment:
| Q |
20 |
agatataacatacattgaattggttggcacctccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatagttgggagt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
11989 |
agatataacatacattgaattggttggcacctccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatagtttgaagt |
12088 |
T |
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| Q |
120 |
ggaatgcctcataaattgtcttggattaatgctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctc |
209 |
Q |
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| T |
12089 |
ggaatgcctcataaattgtcctggattaatgctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctc |
12178 |
T |
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Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 2171272 - 2171083
Alignment:
| Q |
20 |
agatataacatacattgaattggttggcacctccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatagttgggagt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
2171272 |
agatataacatacattgaattggttggcacctccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatagtttgaagt |
2171173 |
T |
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| Q |
120 |
ggaatgcctcataaattgtcttggattaatgctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctc |
209 |
Q |
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| T |
2171172 |
ggaatgcctcataaattgtcctggattaatgctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctc |
2171083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 2187347 - 2187534
Alignment:
| Q |
22 |
atataacatacattgaattggttggcacctccatagaacaatttccatgttcatttctaaatctcgtgagggtccatactctacgaatagttgggagtgg |
121 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||| ||||||| | |||||||||| ||| |||| |||| ||||| |
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| T |
2187347 |
atataacatacattgaattggttggtacttccatagaacaatttccattttcctttcaaaatctctccatggtccatactttacaaatatttggaagtgg |
2187446 |
T |
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| Q |
122 |
aatgcctcataaattgtcttggattaatgctcatgagaatgataaaccaagctccatggtgtcttcaaatgttcaatttcttcatctc |
209 |
Q |
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| T |
2187447 |
aaagcctcataatttgtcttggattaatgctcgtgaaaatgatataccgagctccacggtgtattcaaatgttcaatttcttcatctc |
2187534 |
T |
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