View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_286 (Length: 222)
Name: NF9388A_low_286
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_286 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 39956379 - 39956600
Alignment:
| Q |
1 |
ccaaaccactctaaactctccaaacccctttactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaacaaa |
100 |
Q |
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| T |
39956379 |
ccaaaccactctaaactctcgaaacccctttactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaacaaa |
39956478 |
T |
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| Q |
101 |
aaccaaacactcaacacaaccacactcttcgc---tcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaacaac |
197 |
Q |
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| T |
39956479 |
aaccaaacactcaacacaaccacacttttcactcatcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaacaac |
39956578 |
T |
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| Q |
198 |
ttgatgagatttccgttgaaaa |
219 |
Q |
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|||||||||||||| ||||||| |
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| T |
39956579 |
ttgatgagatttccattgaaaa |
39956600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 67 - 219
Target Start/End: Original strand, 39940766 - 39940919
Alignment:
| Q |
67 |
acgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactca-acacaaccacactcttcgctcatcttcatcgtaacatggcttcagaacctca |
165 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
39940766 |
acgaaagcgacttcattaacaatcgcaaaatcaaaaccaaacactctgatacaaccacactcttcactcatcttcatcgtaacatggctccagaacctca |
39940865 |
T |
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| Q |
166 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccgttgaaaa |
219 |
Q |
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| T |
39940866 |
tcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaaa |
39940919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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