View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_288 (Length: 222)
Name: NF9388A_low_288
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_288 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 36291325 - 36291132
Alignment:
| Q |
10 |
gatacatattaaaatattatgatattataggaagagataaatagaaagaaaataatgtgtagaaggagtgcatgaaataaagaaaatgaagtgtgtacaa |
109 |
Q |
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| T |
36291325 |
gataaatataaaaatattatgatgtgataggaagagataaatagaaagaaaataatgtgtagaacgagcgcatgaaataaagaaaatgaagtgtgtacaa |
36291226 |
T |
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| Q |
110 |
aaataagtgctctaaaaaatattacttcagtgacatccttcttgattgcaaactgtggcaccatattatccgatgaagaaggcctgcaaaagct |
203 |
Q |
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| T |
36291225 |
aaataagtgctctaaaaaatattacttcagtgacatccttcttgattgcaaactgtggcaccatattatccgatgaagaaggcctgcaaaagct |
36291132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 36286153 - 36286075
Alignment:
| Q |
125 |
aaaatattacttcagtgacatccttcttgattgcaaactgtggcaccatattatccgatgaagaaggcctgcaaaagct |
203 |
Q |
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|||||||||||||||||||||| |||||||||||| | |||||| |||| ||||| ||||||||||||||||||||||| |
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| T |
36286153 |
aaaatattacttcagtgacatctttcttgattgcacattgtggctccatgttatctgatgaagaaggcctgcaaaagct |
36286075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 36280612 - 36280537
Alignment:
| Q |
125 |
aaaatattacttcagtgacatccttcttgattgcaaactgtggcaccatattatccgatgaagaaggcctgcaaaa |
200 |
Q |
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|||||| ||||| |||||||||||||||||||||||| ||| || |||| ||||| ||||||||| |||||||||| |
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| T |
36280612 |
aaaataatacttgagtgacatccttcttgattgcaaagtgttgctccatgttatctgatgaagaaagcctgcaaaa |
36280537 |
T |
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