View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_29 (Length: 415)
Name: NF9388A_low_29
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 39278409 - 39278806
Alignment:
| Q |
12 |
atgaagctgcagacaattgagcaacaacgaaatattttgacaatgctagagaaatctttggcaaaagaaagggatcttgagaataatttatatcattcta |
111 |
Q |
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| T |
39278409 |
atgaagctgcagacaattgagcaacaacgaaatattttgacaatgctagagaaatctttggcaaaagaaagggatcttgagaagaatttatatcattcta |
39278508 |
T |
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| Q |
112 |
gagaaattcaggaaaagctgaaacaaagtatgtcctccttagagcacgagctagttcaagcggaggaagaaactattgatgtttgggaaagattgtttga |
211 |
Q |
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| T |
39278509 |
gagaaattcaggaaaagctgaaacaaagtatgtcctccttagagcacgagctagttcaagcggaggaagaaactattgatgtttgggaaagattgtttga |
39278608 |
T |
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| Q |
212 |
ggctgacaatgcacatgagattctgatgggaatttcaaaaagtctgttgagtagactccagattcctcatttcaatttgaatggtttaagtcggcgtgaa |
311 |
Q |
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| T |
39278609 |
ggctgacaatgcacatgagattctgatgggaatttcaaaaagtctgttgagtagactccagatttctcatttcaatttgaatggtttaagtcggcgtgaa |
39278708 |
T |
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| Q |
312 |
tccgagcttcaagctaagctcgaaacttttgtagaacaattaaataccagggatattattttgaacaagattgaaagcagcaccggtgaattaaatgt |
409 |
Q |
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| T |
39278709 |
tccgagcttcaagctaagctcgaaacttttgtagaacaattaaataccagggatattattttgaacaagattgaaagcagcaccggtgaattaaatgt |
39278806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 5662221 - 5662314
Alignment:
| Q |
157 |
acgagctagttcaagcggaggaagaaactattgatgtttgggaaagattgtttgaggctgacaatgcacatgagattctgatgggaatttcaaa |
250 |
Q |
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| T |
5662221 |
acgagttaattcaaacagaggaagaagcgatcgaagtttgggaaagattttttgaggcagacaatgcgcgtgagatcctgaagggaatttcaaa |
5662314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 5662083 - 5662164
Alignment:
| Q |
19 |
tgcagacaattgagcaacaacgaaatattttgacaatgctagagaaatctttggcaaaagaaagggatcttgagaataattt |
100 |
Q |
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| T |
5662083 |
tgcaaacaactgagcaacatagaaacattttgaggatgcttgagaaatctttggcaaatgaaatagatctcgagaagaattt |
5662164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 31466590 - 31466546
Alignment:
| Q |
362 |
ggatattattttgaacaagattgaaagcagcaccggtgaattaaa |
406 |
Q |
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| T |
31466590 |
ggatattattatgaacacgactgaaagcagcaccggtgaattaaa |
31466546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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