View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_290 (Length: 220)
Name: NF9388A_low_290
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_290 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 19732998 - 19732819
Alignment:
| Q |
20 |
gtgttgcaattagggcacagtcataataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc |
119 |
Q |
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| T |
19732998 |
gtgttgcaattagggcacaatcataataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc |
19732899 |
T |
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| Q |
120 |
atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaag |
199 |
Q |
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| T |
19732898 |
atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaag |
19732819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 19753528 - 19753349
Alignment:
| Q |
20 |
gtgttgcaattagggcacagtcataataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc |
119 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19753528 |
gtgttgcaattagggcacaatcagaataaaagttaacacggtcaataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagc |
19753429 |
T |
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| Q |
120 |
atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaag |
199 |
Q |
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| T |
19753428 |
atcttagctacttgctctgcatgagaaatattattaacaaccagtatgtcttcatagatactacagagcctttcccgaag |
19753349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 40218880 - 40219016
Alignment:
| Q |
63 |
aataataatacctcggtatcacatgcatgaataagatgcctgtaatttactgtaagcatcttagctacttgctctgcatgagaaatattattaacaacca |
162 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||| ||| ||||| || | ||||||| | || | |||||| ||| |||||||| ||| |||| |
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| T |
40218880 |
aataattatacctcggtatcacatgcataaataagatgccggtattttacagtgatcatcttaacaacctcctctgcgagaggaatattatcaaccacca |
40218979 |
T |
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| Q |
163 |
gtatgtcttcatagatactacagagcctttcccgaag |
199 |
Q |
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| T |
40218980 |
gaatatcttcatagatacgacagagtctgtcccgaag |
40219016 |
T |
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