View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_291 (Length: 220)
Name: NF9388A_low_291
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_291 |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 22679046 - 22679187
Alignment:
| Q |
79 |
attcactaagctcttattgattatgataaatctacgcagagagggctttatgtcggtgtcatctagtacacattataccttaaccaaagaagatgttggt |
178 |
Q |
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| T |
22679046 |
attcactaagctcttattgattatgataaatctacgcagagagggctttatgtcggtgtcatctggtacacattataccttaaccaaagaagatgttggt |
22679145 |
T |
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| Q |
179 |
tgttgtttgactttttcatacacaccaattaattctgaaggt |
220 |
Q |
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| T |
22679146 |
tgttgtttgactttttcatacacaccaattaattctgaaggt |
22679187 |
T |
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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 22680410 - 22680480
Alignment:
| Q |
150 |
attataccttaaccaaagaagatgttggttgttgtttgactttttcatacacaccaattaattctgaaggt |
220 |
Q |
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| T |
22680410 |
attataccttgaccgaagaagatgttggttgttgtttgacttttgcatacacaccaattaattctgaaggt |
22680480 |
T |
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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 21227321 - 21227253
Alignment:
| Q |
152 |
tataccttaaccaaagaagatgttggttgttgtttgactttttcatacacaccaattaattctgaaggt |
220 |
Q |
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| T |
21227321 |
tataccttgaccaaagaagatgttggttgttgtttgacttttgtatacataccaattaattttgaaggt |
21227253 |
T |
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