View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_292 (Length: 217)
Name: NF9388A_low_292
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_292 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 8947195 - 8946993
Alignment:
| Q |
15 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
114 |
Q |
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| T |
8947195 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
8947096 |
T |
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| Q |
115 |
ggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcatt |
214 |
Q |
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| T |
8947095 |
ggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaatagcaacaattcatcatt |
8946996 |
T |
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| Q |
215 |
ttg |
217 |
Q |
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||| |
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| T |
8946995 |
ttg |
8946993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 8973299 - 8973502
Alignment:
| Q |
14 |
tcactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtt |
113 |
Q |
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|||||||||||||||||||||||| ||| ||| |||||||||||||||||||| | | ||| ||||||||||| ||||| ||||||| | |||||| |
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| T |
8973299 |
tcactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtatgattgataccggtgtt |
8973398 |
T |
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| Q |
114 |
tggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcat |
213 |
Q |
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| T |
8973399 |
tggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaataccaacaattcatctt |
8973498 |
T |
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| Q |
214 |
tttg |
217 |
Q |
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|||| |
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| T |
8973499 |
tttg |
8973502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 8961899 - 8962100
Alignment:
| Q |
16 |
actcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgtttg |
115 |
Q |
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||||||| ||||||||||| || ||||| | |||||| |||| ||||||| | | ||| ||||||||||| ||||| ||||||| | |||||||| |
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| T |
8961899 |
actcacctcaattccttggtcttaatccctacaaaggggtgtggctagcttctgattatggaaaagatgtcattgttggtgtgattgataccggtgtttg |
8961998 |
T |
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| Q |
116 |
gcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcattt |
215 |
Q |
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| T |
8961999 |
gccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaaattatgtcaatttgaaaataccaacaattcatctttt |
8962098 |
T |
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| Q |
216 |
tg |
217 |
Q |
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|| |
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| T |
8962099 |
tg |
8962100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 21688346 - 21688169
Alignment:
| Q |
15 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
114 |
Q |
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|||||||| ||||| |||||||| ||||||| | ||||||||||||| ||||| | |||||| ||||| ||||| ||||| | || ||| | ||||||| |
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| T |
21688346 |
cactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatcattgttggtgtaatagacactggtgttt |
21688247 |
T |
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| Q |
115 |
ggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttg |
192 |
Q |
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|||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||| | ||||||||||||| |
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| T |
21688246 |
ggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttg |
21688169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 34963857 - 34963779
Alignment:
| Q |
97 |
tgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
175 |
Q |
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|||||||| |||| |||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |
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| T |
34963857 |
tgattgacacaggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
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