View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_3 (Length: 589)
Name: NF9388A_low_3
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 24 - 324
Target Start/End: Complemental strand, 42984379 - 42984080
Alignment:
| Q |
24 |
gctgtattggctattgttattagctctaatttcnnnnnnnnncttgtcaatatactagatatttggttaccaagataatagttttattgaggaatagttt |
123 |
Q |
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| T |
42984379 |
gctgtattggctattgttattagctctaatttctttttttt-cttgtcaatatactagatatttggttaccaagataatagttttattgaggaatagttt |
42984281 |
T |
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| Q |
124 |
ggttttatggagcaatgggatggttttgtaaaggaaattaaatattctgagtaagagtctcatcacatattattttgttattttacatgttctttggaac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42984280 |
ggttttatggagcaatgggatggttttgtaaaggaaattaaatattctgagtaagagtctcatcacatattattttgttattttacatgttcttcagaac |
42984181 |
T |
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| Q |
224 |
caccaacttctaagatctaggagttggacgtggagctatggcgaattggcgatgatctgctgccgggcatacaccatcaaatgataatcaaccaaaagca |
323 |
Q |
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| T |
42984180 |
caccaacttctaagatctaggagttggacgtggagctatggcgaattggcgatgatctgctgccgggcatacaccatcaaatgataatcaaccaaaagca |
42984081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 355 - 519
Target Start/End: Complemental strand, 42984080 - 42983916
Alignment:
| Q |
355 |
tcgccatgactccacattacaaagagaatcttgcataactttattgtcaagacgagaatcgctcatgccctatgatgtacattgatgacaaggtctttga |
454 |
Q |
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| T |
42984080 |
tcgccatgactccacattacaaagagaatcttgcgtaactttattgtcaagacgagaatcgctcatgccctatgatgtacattgatgacaaggtctttga |
42983981 |
T |
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| Q |
455 |
atgtcttgaggaatcctggaaggttgcactagttgtaaatctctagtaagaatccatgaggtttt |
519 |
Q |
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| T |
42983980 |
atgtcttgaggaatcctggaaggttgcactagttgtaaatctctagtaagaatccatgaggtttt |
42983916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 42983903 - 42983831
Alignment:
| Q |
502 |
aagaatccatgaggttttgaaatcatggatattggcaatggtttcaccatggtcaaatttgatcttgaggatg |
574 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42983903 |
aagaatccatgaggttttgaaatcatggatattggcaatggtttcaccatggtcaaatttgatcttgaggatg |
42983831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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