View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_303 (Length: 206)

Name: NF9388A_low_303
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_303
NF9388A_low_303
[»] chr2 (19 HSPs)
chr2 (17-186)||(44624829-44624998)
chr2 (17-166)||(44615456-44615605)
chr2 (17-177)||(39153106-39153266)
chr2 (17-153)||(39138693-39138826)
chr2 (20-177)||(39387469-39387626)
chr2 (20-153)||(39472763-39472896)
chr2 (17-177)||(39216704-39216864)
chr2 (17-177)||(39396627-39396787)
chr2 (17-150)||(39371164-39371297)
chr2 (17-152)||(39205742-39205877)
chr2 (20-177)||(39196485-39196642)
chr2 (17-150)||(39380496-39380629)
chr2 (20-177)||(39413004-39413161)
chr2 (17-145)||(44895114-44895242)
chr2 (26-152)||(39478294-39478420)
chr2 (18-177)||(39421161-39421317)
chr2 (17-152)||(39223758-39223893)
chr2 (49-168)||(39188738-39188857)
chr2 (17-164)||(39604363-39604510)
[»] chr8 (3 HSPs)
chr8 (17-153)||(44730162-44730298)
chr8 (17-175)||(45343012-45343170)
chr8 (17-178)||(44949869-44950030)
[»] chr5 (2 HSPs)
chr5 (22-178)||(17060698-17060854)
chr5 (20-177)||(33562339-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (17-178)||(5849-6010)
[»] chr7 (1 HSPs)
chr7 (17-153)||(19808950-19809083)
[»] chr6 (1 HSPs)
chr6 (17-80)||(16114414-16114477)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 44624829 - 44624998
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44624829 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgat 44624928  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctggatacaag 186  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  44624929 ttatggattgcatacttattttgatgaagatgaagtctaaaagctttttggatctgttgctggatacaag 44624998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 44615456 - 44615605
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||    
T  44615456 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 44615555  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttg 166  Q
    ||| ||||||  || ||| |||||||||||||||||| | ||| ||||||    
T  44615556 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttg 44615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 39153106 - 39153266
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||||||||||||||| || || | ||| ||||||||||| || ||||||||||||||||||||||||| |||||| || |||||| || ||||||||||    
T  39153106 gagaagaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgat 39153205  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    ||||||||||  ||||| ||| ||| ||||||||||| |  ||||||||| || |||||||    
T  39153206 ttatggattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgct 39153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 39138693 - 39138826
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||||||||||||||||||||| | | |  |||||||||||||||||   ||||||||||||||| ||| ||||||||| |||||| ||||||||||  |    
T  39138693 gagaagaagcattgaagctagcacttaatctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagt 39138789  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtc 153  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  39138790 ttatgaattgcttacttattttgatgaagatgaagtc 39138826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 39387626 - 39387469
Alignment:
Q  20 aagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  ||||| || |||||  || ||||||| |||||    
T  39387626 aagaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaattta 39387527  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |||  ||| |  ||||||||| |||||||||||  |  ||||||||| || |||||||    
T  39387526 tgggctgcttgattattttgacgaagatgaagttttggagctttttgcatttgttgct 39387469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 39472896 - 39472763
Alignment:
Q  20 aagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    |||| ||||||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||||  ||||| || |||||| || ||||||| |||||    
T  39472896 aagacgcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaattta 39472797  T
Q  120 tggattgcatacttattttgatgaagatgaagtc 153  Q
    || ||||| ||||| |||||||||||||||||||    
T  39472796 tgaattgcttacttcttttgatgaagatgaagtc 39472763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 39216704 - 39216864
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    ||||||||||||||||||||||   ||| |||||| |||||||||  ||||||||| |||||||||||| ||||||||| |||||  || ||||||| ||    
T  39216704 gagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaat 39216803  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    ||||||||||  ||||| ||||| ||||||||||||  |  ||||||||| ||||||||||    
T  39216804 ttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgct 39216864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 39396787 - 39396627
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    ||||||||||| |||||||||| | ||| |||| |||| |||| | ||||||||||||||||||||||| |||||| || ||| | ||| ||||||| ||    
T  39396787 gagaagaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaat 39396688  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    ||||||||||| ||||| ||| ||||||||||||||  |  ||||||||| ||| ||||||    
T  39396687 ttatggattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgct 39396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 39371164 - 39371297
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||| ||||||||||||||||| | |||  ||||||| |||||||||||||||| | ||||| |||||| |||||| || ||||||||| ||||||| |     
T  39371164 gagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaa 39371263  T
Q  117 ttatggattgcatacttattttgatgaagatgaa 150  Q
    ||||||||||  ||||| ||||||||||||||||    
T  39371264 ttatggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 39205877 - 39205742
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    ||||| ||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||| ||| |||||| || |||||| || ||||||||||    
T  39205877 gagaaaaagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgat 39205778  T
Q  117 ttatggattgcatacttattttgatgaagatgaagt 152  Q
    ||||  ||||| |  || ||||||| ||||||||||    
T  39205777 ttataaattgcttgattcttttgataaagatgaagt 39205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 39196642 - 39196485
Alignment:
Q  20 aagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    |||||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||||| |||||| || |||||  || ||||||| |||||    
T  39196642 aagaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaattta 39196543  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |  ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  39196542 taaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 39196485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 39380629 - 39380496
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    ||||||||||| ||| |||||| | ||| ||||||||| |||| | ||| ||||||||| ||||| ||| |||||| ||||||||| || ||||||| ||    
T  39380629 gagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaat 39380530  T
Q  117 ttatggattgcatacttattttgatgaagatgaa 150  Q
    ||||||||||| ||||| ||| ||||||||||||    
T  39380529 ttatggattgcttacttctttcgatgaagatgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 39413161 - 39413004
Alignment:
Q  20 aagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    ||||||||||||||||||| | ||| |||||||||||| ||||||||||||| ||||| ||||||| ||||||  | ||||| ||| |||||||  |||     
T  39413161 aagaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttg 39413062  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |||||||  ||||| ||| |||||||||||| || |  ||||||||| || |||||||    
T  39413061 tggattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgct 39413004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 44895242 - 44895114
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    ||||| |||||||||||||||| | | | || ||||||||||| |||| |||||||||||||||||||| |||||| || |||||| || ||||||| ||    
T  44895242 gagaacaagcattgaagctagcacataaattcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaat 44895143  T
Q  117 ttatggattgcatacttattttgatgaag 145  Q
    ||||||||||  ||||| ||| |||||||    
T  44895142 ttatggattgattacttctttcgatgaag 44895114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 152
Target Start/End: Complemental strand, 39478420 - 39478294
Alignment:
Q  26 cattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggatt 125  Q
    ||||||||||||| | ||| ||||||||| |||| | |||||||||||||||||||| ||  ||||| |  |||||| || ||||||| |||||||||||    
T  39478420 cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt 39478321  T
Q  126 gcatacttattttgatgaagatgaagt 152  Q
    || ||||| ||| || |||| ||||||    
T  39478320 gcttacttctttcgaagaaggtgaagt 39478294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 39421317 - 39421161
Alignment:
Q  18 agaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatt 117  Q
    |||||||||||||||||| || | ||| ||||||||||| ||| |||||||||||||||||  |||   ||||||||| |||||| || ||||||| |||    
T  39421317 agaagaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaatactgaaaataattt---ggttctcggttttctactgcttttgtcaatt 39421221  T
Q  118 tatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    ||   ||||  |||||||||  |||||||||||||  |  ||||||||| || |||||||    
T  39421220 taccaattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgct 39421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 39223758 - 39223893
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    ||||| ||||||||||||||||   ||| || ||||  ||||||||||| ||||||||||| ||||||| |||||| || |||||  || ||||||| ||    
T  39223758 gagaaaaagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaat 39223857  T
Q  117 ttatggattgcatacttattttgatgaagatgaagt 152  Q
    ||||  ||||| |  ||  |||||||||||||||||    
T  39223858 ttataaattgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 39188857 - 39188738
Alignment:
Q  49 aaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatg 148  Q
    |||||||||||||||||||||| || ||||||||||| |||||| || |||||| |  || | || |||||||| |||  | ||| |||  |||||||||    
T  39188857 aaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatg 39188758  T
Q  149 aagtcataaagctttttgga 168  Q
    | ||  ||||||||||||||    
T  39188757 atgttttaaagctttttgga 39188738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 39604363 - 39604510
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    ||||||||||| |||||||||| | | | |||||| ||||||| |  |||||||| |||||||   |||  ||||| || |||||| |  || |||| ||    
T  39604363 gagaagaagcaatgaagctagcacttaatttgaaatctaacataagtgaaaataccgaaaatttggtggcagttctgggttttctactccttgtgtcaat 39604462  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttt 164  Q
    ||||||||||  | ||| ||| ||||||||||||||  ||||||||||    
T  39604463 ttatggattggctccttctttcgatgaagatgaagttttaaagctttt 39604510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 44730162 - 44730298
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||| ||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  44730162 gagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgat 44730261  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtc 153  Q
    |||| |||||| |||||| ||||||| ||||||||||    
T  44730262 ttatagattgcttacttactttgatggagatgaagtc 44730298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 45343012 - 45343170
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    ||||||||||||| |||||||| | |||||||||||||||| |||||| |||||||||||| || ||| | ||||| || |||||| |||||||||| ||    
T  45343012 gagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaat 45343111  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttg 175  Q
    | ||| ||||| ||||| ||||||| ||||||||||| |  ||||||||| ||||||||    
T  45343112 tcatgtattgcttacttcttttgataaagatgaagtcttggagctttttgtatctgttg 45343170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 44950030 - 44949869
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||| ||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  ||||    
T  44950030 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 44949931  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 178  Q
    ||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  44949930 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 44949869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 17060698 - 17060854
Alignment:
Q  22 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 121  Q
    ||||| ||||||||||| | |||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| ||||| |||||| ||||||    
T  17060698 gaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatg 17060797  T
Q  122 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 178  Q
    |||||  ||||||||||||| ||||||||||| |  | ||||||| |||||||||||    
T  17060798 gattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgctg 17060854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 33562339 - 33562496
Alignment:
Q  20 aagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgattta 119  Q
    |||||||||||||||||||   ||| ||||||||||||||||||||||||||||||  || ||||| |||||| || |||||  || ||||||| |||||    
T  33562339 aagaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaattta 33562438  T
Q  120 tggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 177  Q
    |  ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  33562439 taaattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 33562496  T

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Target: scaffold0283 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 6010 - 5849
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||| ||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  ||||    
T  6010 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 5911  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 178  Q
    ||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  5910 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 5849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 19808950 - 19809083
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 116  Q
    |||||||| ||||||||||||| | ||| ||||||||||||||||||   | ||||||||||||| ||| |||||| || |||||| || |||||||  |    
T  19808950 gagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtcagt 19809046  T
Q  117 ttatggattgcatacttattttgatgaagatgaagtc 153  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  19809047 ttatgaattgcttacttattttgatgaagatgaagtc 19809083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 16114414 - 16114477
Alignment:
Q  17 gagaagaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattc 80  Q
    ||||| ||||||||||||||||||| || ||||||||| |||||| ||| |||||| |||||||    
T  16114414 gagaaaaagcattgaagctagcgcgcgatttgaaagcttacatgagagagaatactaaaaattc 16114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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