View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_309 (Length: 203)
Name: NF9388A_low_309
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_309 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 33119950 - 33120118
Alignment:
| Q |
17 |
caatataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatatac |
116 |
Q |
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| T |
33119950 |
caatataggatggttggcgatagttggtttagcagtctacataatattcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacac |
33120049 |
T |
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| Q |
117 |
cctttaaggtatagaggagtatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtt |
185 |
Q |
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| T |
33120050 |
cctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtt |
33120118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 33116784 - 33116906
Alignment:
| Q |
63 |
ttcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggagtatgtggaggaatagcatcaacaacag |
162 |
Q |
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| T |
33116784 |
ttcttttcacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtg |
33116883 |
T |
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| Q |
163 |
tgtgggtctctaacctcattgtt |
185 |
Q |
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| T |
33116884 |
tttggatctcaaaccttattgtt |
33116906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 52 - 178
Target Start/End: Complemental strand, 21492025 - 21491899
Alignment:
| Q |
52 |
tctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggagtatgtggaggaatagc |
151 |
Q |
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| T |
21492025 |
tctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagc |
21491926 |
T |
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| Q |
152 |
atcaacaacagtgtgggtctctaacct |
178 |
Q |
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| T |
21491925 |
atcaacaacagtgtgggtttccaacct |
21491899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 21558576 - 21558479
Alignment:
| Q |
61 |
tattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggagtatgtggaggaatagcatcaaca |
158 |
Q |
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| T |
21558576 |
tattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
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