View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_31 (Length: 405)
Name: NF9388A_low_31
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 388
Target Start/End: Complemental strand, 2358835 - 2358454
Alignment:
| Q |
7 |
gtattatctgtgactcaatagcaattttgtttgnnnnnnnn-aacatcatgatacatgcacatgcatgtcagcatgaacagcataatgtatacttctgct |
105 |
Q |
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| T |
2358835 |
gtattatctgtgactcaatagcaattttgtttgtttttctttaacatcatgatacatgcacatgcatgtcagcatgaacagcatgatgtatacttctact |
2358736 |
T |
|
| Q |
106 |
atactatttttacaacattatgtgtaaaaatattaaataaaaatttccaatttaaatgtgtcaaggtgctcaattgtttctagatttaattatactctct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
2358735 |
atactatttttacaacattatgtgtaaaaatattaaataaaaatttccaatttaaatgtgtcaaggtgctcaattgtttccagatttaattgcactctct |
2358636 |
T |
|
| Q |
206 |
ctatactataccatgttatattgatatgcaaagaaannnnnnngcatgtttgttaccaacatgagttaactcacggtattcgaaacatgatttaagttat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
2358635 |
ctatactataccatgttatattgatatgcaaagaaatttttttgcatgtttgttaccgacataagttaactcacggtattcgaaacataatttaagttat |
2358536 |
T |
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| Q |
306 |
attggttgtattttaaaatgacttaaattacgttgggttatatacatacgtgagttaagtcacataagggtagaataattttt |
388 |
Q |
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| T |
2358535 |
attggttgtatttcaatatgacttaagtcacgttgggttatacacatacgtgagttaagtcacgtaa-ggtagaataattttt |
2358454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 31643434 - 31643243
Alignment:
| Q |
7 |
gtattatctgtgactcaatagcaattttgtttgnnnnnnnn-aacatcatgatacatgcacatgcatgtcagcatgaacagcataatgtatacttctgct |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
31643434 |
gtattatctgtgactcaatagcaattttgtttgtttttttttaacatcatgatacatgcacatgcatgtcagcatgaacagcatgatg-----------t |
31643346 |
T |
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| Q |
106 |
atactatttttacaacattatgtgtaaaaatattaaataaaaatttccaa-tttaaatgtgtcaaggtgctcaattg-tttctagatttaattatactct |
203 |
Q |
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|||||||||||||||||| ||||||||||| ||||||| ||||||||||| |||| |||||||| |||||| ||| | |||||||| |||||| ||| || |
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| T |
31643345 |
atactatttttacaacatcatgtgtaaaaaaattaaat-aaaatttccaattttatatgtgtcagggtgcttaatggttttctagacttaattgtaccct |
31643247 |
T |
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