View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_312 (Length: 202)
Name: NF9388A_low_312
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_312 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 4e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 41621590 - 41621452
Alignment:
| Q |
29 |
agaggaacaaacatgaatccactaacaaaaaatgtttttgatatgatcatctttctttctccacttattgttacaatgagcactaaaggtaaaagaattt |
128 |
Q |
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| T |
41621590 |
agaggaacaaacatgactccaataacaaaaaatatttttgatatgatcatctttatttctccacttattgttacaatgagcatgagaggtaaaacaattt |
41621491 |
T |
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| Q |
129 |
tttccttttcaacattcttcgttacttcatacttaatat |
167 |
Q |
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| T |
41621490 |
tttccttttcaacatttttcgttacttcgtacttaatat |
41621452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 41619259 - 41619220
Alignment:
| Q |
141 |
cattcttcgttacttcatacttaatatattaacattttat |
180 |
Q |
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| T |
41619259 |
cattcttcgttacttcatacttaatatattaacattttat |
41619220 |
T |
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