View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_low_314 (Length: 201)
Name: NF9388A_low_314
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_314 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 39977416 - 39977274
Alignment:
| Q |
43 |
aatggttcttctaaggcttgtagatttggttttgtaccaactacttgcaaattcatactatagagctgcaagaaaaatgaaaagttatggttttaattta |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39977416 |
aatggttcttctaaggcttgtagatttggttttgtaccaactacttgcaaattcatactatagagctgcaagaaaaatgaaaagttatggttttaattta |
39977317 |
T |
|
| Q |
143 |
gcttatctttcatctaaaccacctcatcaaccttgttcatttc |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39977316 |
gcttatctttcatctaaaccacctcatcaaccttgttcttttc |
39977274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University