View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_33 (Length: 402)
Name: NF9388A_low_33
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 6538968 - 6538609
Alignment:
| Q |
19 |
cattgaatagtgaaagattagtgaagacttgaaagaagaaagagtagataaaatgttaaatgtgataatgaagtcatgcggctcatgtcatgagtgtaag |
118 |
Q |
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| T |
6538968 |
cattgaatagtgacagattagtgaagacttcaaagaagaaagagtagataaaatgttaaatgtgataatgaagtcatgtggctcatgtcatgagtgtaag |
6538869 |
T |
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| Q |
119 |
tcataactcataacatatacttactccgtaataaaaaaggtacatgtacctttttgctaatattgtgtcacgaaatgagttcacttttcttnnnnnnntg |
218 |
Q |
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| T |
6538868 |
tcataactcataacatatacttcctccgtaataaaaaaagtacatgtacctttttgctaatattgtgtcacgaaatgagttcacttttcttaaaaaaatg |
6538769 |
T |
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| Q |
219 |
gtcacttacagtttacactgatttcaatagtataatataacattgtgttaaaactataaaaatccatgaaagagtgaagattgaagtgtttgaaagtagt |
318 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6538768 |
gtcacttacag-atacattgatttcaatagtataatataacattgtgttaaaactataaaaatccatgaaagagtgaaaattgaagtgtttgaaagtagt |
6538670 |
T |
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| Q |
319 |
agcagagtaattgattggtgatagatgcatgaagttttacatagagagaaagttgttttgt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6538669 |
agcagagtaattgattggtgatagatgcatgaagttgtacatagagagaaagttgttttgt |
6538609 |
T |
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