View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_37 (Length: 397)

Name: NF9388A_low_37
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_37
NF9388A_low_37
[»] scaffold0094 (1 HSPs)
scaffold0094 (64-259)||(42395-42590)
[»] chr7 (2 HSPs)
chr7 (269-392)||(23996447-23996570)
chr7 (6-61)||(23996389-23996444)
[»] chr4 (6 HSPs)
chr4 (64-217)||(45354875-45355028)
chr4 (64-217)||(45368616-45368769)
chr4 (64-222)||(45353210-45353362)
chr4 (64-222)||(45362689-45362841)
chr4 (64-117)||(45354782-45354835)
chr4 (64-117)||(45368523-45368576)
[»] chr6 (2 HSPs)
chr6 (269-392)||(19744677-19744800)
chr6 (225-271)||(4014358-4014404)
[»] chr2 (1 HSPs)
chr2 (312-388)||(1092646-1092721)


Alignment Details
Target: scaffold0094 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 64 - 259
Target Start/End: Original strand, 42395 - 42590
Alignment:
Q  64 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaaggcggaagccccccaaaattgttttccaaaaatgggtgatcaaaag 163  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  42395 cgtagcacaatatataagactcgtgattcagacaatccaatcttccgtgtgtaaggcggaagcccccgaaaattgttttccaaaaatgggtgatcataag 42494  T
Q  164 atcgaatcactatgcgtatcttggtggtcattactttataatttctttttggcttactcctcttcctgttctattgatcagaagcatccagcagcg 259  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||    
T  42495 atcgaatcactatgcgtatcttgttggtcattactttataatttctttttggcttactcttcttcctgttctattgataagaagcatccaacagcg 42590  T

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Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 23996447 - 23996570
Alignment:
Q  269 ggaaggggataatcttcagtaatggcctacaaatagtactgcactaatttggtttctactaatatttttgtacaagtaattgcttactaaatttccgtgt 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23996447 ggaaggggataatcttcagtaatggcctacaaatagtactgcactaatttggtttctactaatatttttgtacaagtaattgcttactaaatttccgtgt 23996546  T
Q  369 ttgcaatcatttgatactaattgt 392  Q
    ||||||| ||||||||||||||||    
T  23996547 ttgcaattatttgatactaattgt 23996570  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 23996389 - 23996444
Alignment:
Q  6 gacaaagaatgaagaatagcaattgtggaagaacaatgattgacgataaatgaaaa 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23996389 gacaaagaatgaagaatagcaattgtggaagaacaatgattgacgataaatgaaaa 23996444  T

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Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 45354875 - 45355028
Alignment:
Q  64 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaaggcggaagccccccaaaattgttttccaaaaatgggtgatcaaaag 163  Q
    ||||||||| |||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  45354875 cgtaacacaatatataagactcatgattcaggaaacccaatcttccgcgtgtaaggcggaagccccccaaaatagttatccaaaaatgggtgatcaaaag 45354974  T
Q  164 atcgaatcactatgcgtatcttggtggtcattactttataatttctttttggct 217  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45354975 atcaaatcactatgtgtatcttggtggtcattactttataatttctttttggct 45355028  T

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Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 45368616 - 45368769
Alignment:
Q  64 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaaggcggaagccccccaaaattgttttccaaaaatgggtgatcaaaag 163  Q
    ||||||||| |||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  45368616 cgtaacacaatatataagactcatgattcaggaaacccaatcttccgcgtgtaaggcggaagccccccaaaatagttatccaaaaatgggtgatcaaaag 45368715  T
Q  164 atcgaatcactatgcgtatcttggtggtcattactttataatttctttttggct 217  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45368716 atcaaatcactatgtgtatcttggtggtcattactttataatttctttttggct 45368769  T

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Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 45353210 - 45353362
Alignment:
Q  64 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaaggcggaagccccccaaaattgttttccaaaaatgggtgatcaaaag 163  Q
    ||||||||| ||||||||||||||||||      |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  45353210 cgtaacacaatatataagactcgtgatt------atccaatcttccgtgtgtaaggtggaagccccccaaaatggttttccaaaaatgggtgattaaaag 45353303  T
Q  164 atcgaatcactatgcgtatcttggtggtcattactttataatttctttttggcttactc 222  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  45353304 atcgaatcactatgcgtatcttggtagtcattactttataatttctttttggctgactc 45353362  T

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Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 45362689 - 45362841
Alignment:
Q  64 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaaggcggaagccccccaaaattgttttccaaaaatgggtgatcaaaag 163  Q
    ||||||||| ||||||||||||||||||      |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  45362689 cgtaacacaatatataagactcgtgatt------atccaatcttccgtgtgtaaggaggaagccccccaaaatggttttccaaaaatgggtgattaaaag 45362782  T
Q  164 atcgaatcactatgcgtatcttggtggtcattactttataatttctttttggcttactc 222  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  45362783 atcgaatcactatgcgtatcttggtagtcattactttataatttctttttggctgactc 45362841  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 45354782 - 45354835
Alignment:
Q  64 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaa 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  45354782 cgtaacacaatatataagactcgtgattcaggcaatccaatcttccgcgtgtaa 45354835  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 45368523 - 45368576
Alignment:
Q  64 cgtaacacagtatataagactcgtgattcaggcaatccaatcttccgtgtgtaa 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  45368523 cgtaacacaatatataagactcgtgattcaggcaatccaatcttccgcgtgtaa 45368576  T

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Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 19744677 - 19744800
Alignment:
Q  269 ggaaggggataatcttcagtaatggcctacaaatagtactgcactaatttggtttctactaatatttttgtacaagtaattgcttactaaatttccgtgt 368  Q
    |||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||| |||||| |||||||| ||||||||||| |||||||||| || |    
T  19744677 ggaagggggtaatcttcagtaatggcttgcaaatagtactgccctaatttggtttcaactaatttttttgtagaagtaattgctcactaaatttcagtat 19744776  T
Q  369 ttgcaatcatttgatactaattgt 392  Q
    ||||||||  ||||||||||||||    
T  19744777 ttgcaatcccttgatactaattgt 19744800  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 4014404 - 4014358
Alignment:
Q  225 cttcctgttctattgatcagaagcatccagcagcgccacggaatgga 271  Q
    ||||||||||||||||||||||||| || |||||| ||| |||||||    
T  4014404 cttcctgttctattgatcagaagcaccccgcagcgtcacagaatgga 4014358  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 1092646 - 1092721
Alignment:
Q  312 ctaatttggtttctactaatatttttgtacaagtaattgcttactaaatttccgtgtttgcaatcatttgatactaa 388  Q
    ||||||||||||||| | || ||||| |||||||||||||| |||||||||| || |||||||||  ||||||||||    
T  1092646 ctaatttggtttctaattattttttt-tacaagtaattgctcactaaatttcagtatttgcaatcccttgatactaa 1092721  T

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