View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_38 (Length: 392)
Name: NF9388A_low_38
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 28 - 376
Target Start/End: Complemental strand, 48483882 - 48483535
Alignment:
| Q |
28 |
tgtttttgctgtattattacattatatcaaattcttcaggaagtagtaacttatggatccaccgcaataattcttcagtgagaaatatgcaattttccat |
127 |
Q |
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| T |
48483882 |
tgtttttgctgtattattacattatatcaaattcttcaggaagtagtaacttatggatccaccgcaataattcttcagtgagaaatatgcaattttccat |
48483783 |
T |
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| Q |
128 |
tcatatcatgattggcttgactcaatcacgtactaaccaatctatgcatgtaatcaatttagctcactttcatagttatggagaacttcacctgtatgcc |
227 |
Q |
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| T |
48483782 |
tcatatcatgattggcttgactcgatcacgtactaaccaatctatgcatgtaatcaatttagctcactttcatagttatggagaa-ttcacctgtatgcc |
48483684 |
T |
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| Q |
228 |
tcatacaaatatgttttgggatatcttgacgagctttttgaaagcttatttgtgattattttataacataagaacttatagtcgtgtttggatgaactta |
327 |
Q |
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| T |
48483683 |
tcatacaaatatgttttgggatatcttgacgagctttttgaaagcttatttgtgattattttataacataagaacttatagtcgtgtttggatgaactta |
48483584 |
T |
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| Q |
328 |
taaatttatgatgtgttcataagtttcctttggcatatgtttgatgtcc |
376 |
Q |
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| T |
48483583 |
taaatttatgatgtgttcataagttgcctttggcttatgtttgaagtcc |
48483535 |
T |
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