View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_4 (Length: 563)

Name: NF9388A_low_4
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_4
NF9388A_low_4
[»] chr6 (28 HSPs)
chr6 (1-542)||(33304015-33304556)
chr6 (182-458)||(33644560-33644836)
chr6 (181-460)||(33262337-33262616)
chr6 (193-459)||(33387877-33388143)
chr6 (181-454)||(33285305-33285581)
chr6 (181-459)||(9166472-9166741)
chr6 (201-459)||(28870188-28870446)
chr6 (182-458)||(33057290-33057554)
chr6 (185-461)||(31562835-31563117)
chr6 (226-458)||(33398828-33399042)
chr6 (181-457)||(33409689-33409959)
chr6 (257-460)||(33271582-33271782)
chr6 (181-254)||(33358644-33358717)
chr6 (292-423)||(33358714-33358849)
chr6 (33-102)||(33387723-33387792)
chr6 (496-538)||(31562761-31562803)
chr6 (496-538)||(33285644-33285686)
chr6 (502-538)||(33262658-33262694)
chr6 (498-537)||(33057597-33057636)
chr6 (496-538)||(33358893-33358935)
chr6 (496-538)||(33399080-33399122)
chr6 (496-538)||(33644480-33644522)
chr6 (501-538)||(33410036-33410073)
chr6 (502-538)||(28870109-28870145)
chr6 (30-105)||(33644925-33645000)
chr6 (32-105)||(9166311-9166384)
chr6 (506-538)||(33271861-33271893)
chr6 (45-105)||(33358496-33358556)
[»] scaffold1408 (1 HSPs)
scaffold1408 (181-457)||(355-631)
[»] scaffold0428 (1 HSPs)
scaffold0428 (181-457)||(6101-6377)
[»] chr2 (2 HSPs)
chr2 (162-464)||(17440894-17441178)
chr2 (502-538)||(17440820-17440856)
[»] chr4 (6 HSPs)
chr4 (181-465)||(31479021-31479305)
chr4 (181-465)||(31472560-31472847)
chr4 (181-334)||(31499199-31499352)
chr4 (181-465)||(31504206-31504484)
chr4 (180-457)||(31156933-31157213)
chr4 (280-449)||(31148107-31148267)


Alignment Details
Target: chr6 (Bit Score: 502; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 33304015 - 33304556
Alignment:
Q  1 aatattaaaatggattgttgcaaatgtactataggactctcaggggaaggagattatccataggagacatgatttggtcataacaagacctccgttgaga 100  Q
    |||||||||||||||| || |||||  |||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  33304015 aatattaaaatggattttttcaaattcactataggactctcgggggaagtagattatccataggtgacttgatttggtcataacaagacctccattgaga 33304114  T
Q  101 attacggtagcactcctacagctcatcctaatcattttcttatcggtccactcttgagcaaatggaaacatccaacaatcaggtgccatggaaaataccg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304115 attacggtagcactcctacagctcatcctaatcaatttcttatcggtccactcttgagcaaatggaaacatccaacaatcaggtgccatggaaaataccg 33304214  T
Q  201 cacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttgatccaaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304215 cacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttgatccaaat 33304314  T
Q  301 tggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgtc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304315 tggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgtc 33304414  T
Q  401 atgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgtaggccagatccagaaatatttgttgttctcacgaataatat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304415 atgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgtaggccagatccagaaatatttgttgttctcacgaataatat 33304514  T
Q  501 tggtaggagaaggaagttgaggcaaagattccaacaacatgc 542  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33304515 tggtaggagaaggaagttgaggcaaagattccaacaacatgc 33304556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 182 - 458
Target Start/End: Complemental strand, 33644836 - 33644560
Alignment:
Q  182 ggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgc 281  Q
    |||||||||| |||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| |||||| |    
T  33644836 ggtgccatggtaaatactgcacaacatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacac 33644737  T
Q  282 tcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattg 381  Q
    | | ||||||||||||| ||||||||||| |||||||||| ||||||||| ||| ||||||| | || ||||||||||||  |||||||| |||||||||    
T  33644736 tttgattgttgatccaacttggtatttcacttcctggagttacaatttgagtcctatcaaagtaggttgggtaggattgtaggtttgcctgaatgaattg 33644637  T
Q  382 tgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctg 458  Q
    | ||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  33644636 tatcatccatgaaaatgtcatgctcctgcaacgttccctctcacccaattttgaacagttgaaaatgaccaatcctg 33644560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 181 - 460
Target Start/End: Original strand, 33262337 - 33262616
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 280  Q
    ||||| ||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||| | |||||| | ||||||||||||||| |    
T  33262337 aggtgtcatggaaaatacaacacaacatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatg 33262436  T
Q  281 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaatt 380  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||||||| |  ||| ||  | |||||||||||||||  || ||| | ||||||||    
T  33262437 ctctgattgttgatccaacttggtatttcatttcctggactaacaatttgaaactcatccaaataagtagggtaggattgttggtatgcttgaatgaatt 33262536  T
Q  381 gtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgta 460  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33262537 gtgtcgtccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaccaatcctgta 33262616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 193 - 459
Target Start/End: Original strand, 33387877 - 33388143
Alignment:
Q  193 aaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttg 292  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||  ||||||| ||||||||||||||| ||||| |||||||    
T  33387877 aaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgttg 33387976  T
Q  293 atccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatg 392  Q
    |||||| | ||||||||| |||||| ||||||||||||||||  ||||||  | | |||||||| ||||  |||||||| ||| |||||||||| |||||    
T  33387977 atccaactcggtatttcacttcctgtagtaacaatttgaatcgtatcaaaataggcagggtaggtttgtcggtttgccttaataaattgtgtcatccatg 33388076  T
Q  393 aaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgt 459  Q
    |||||||||||||||||||||  ||||| ||||||| ||||||||||||||||| || |||||||||    
T  33388077 aaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgt 33388143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 181 - 454
Target Start/End: Original strand, 33285305 - 33285581
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 280  Q
    |||||||| |||||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||  |||||||    
T  33285305 aggtgccacggaaaacactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagatctgtctattggtattgaactacccacg 33285404  T
Q  281 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatca---aaggacgtagggtaggattgtgagtttgcctcaatga 377  Q
    |||| ||| || |||||| ||||||||||| |||||||||||||||| |||||||  |||   ||||||| ||||||  | |||  || |||||  ||||    
T  33285405 ctctgattattaatccaacttggtatttcacttcctggagtaacaatatgaatcccttcaaataaggacgcagggtaaaagtgttggtatgcctggatga 33285504  T
Q  378 attgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaat 454  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||    
T  33285505 attgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat 33285581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 181 - 459
Target Start/End: Original strand, 9166472 - 9166741
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 280  Q
    |||||||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||| |||| ||| || |||||    
T  9166472 aggtgccatggagaatactgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacg 9166571  T
Q  281 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaatt 380  Q
    |||  ||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||         || |||| ||| |||||||| ||| ||||    
T  9166572 ctccgattgttgatccaacttggtatttcaattcctggcgtaacaatttgaatcctatcaaa---------gtgggatggtgggtttgcctgaataaatt 9166662  T
Q  381 gtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgt 459  Q
    |  ||| ||||||||||||||||||||||||| ||||| | |||| ||||| ||||||||||||||||| |||||||||    
T  9166663 gcatcatccatgaaaatgtcatgctactgcaatgttccttatcactcaattctggacagttgaaaatgaccaatcctgt 9166741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 201 - 459
Target Start/End: Complemental strand, 28870446 - 28870188
Alignment:
Q  201 cacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttgatccaaat 300  Q
    ||||||||| |||||||||||||| ||||||||||||||  ||||||||||||  |||||||||||||||| |||||| ||||| |||||| |||||| |    
T  28870446 cacaacatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaact 28870347  T
Q  301 tggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgtc 400  Q
    |||||||||| |||||||||||||||| | || |  ||| ||  |   | |||||||||||  || ||||  |||||||||| ||| ||||||||||| |    
T  28870346 tggtatttcacttcctggagtaacaatattaaacgcatccaaatagacaaggtaggattgtcggtatgcccgaatgaattgtttcatccatgaaaatgcc 28870247  T
Q  401 atgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgt 459  Q
    |||||||  ||||||||||||||||| || ||||||||||||||||||| ||| |||||    
T  28870246 atgctacaacaacgttccctctcacctaaatttggacagttgaaaatgatcaaacctgt 28870188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 182 - 458
Target Start/End: Original strand, 33057290 - 33057554
Alignment:
Q  182 ggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgc 281  Q
    |||||||| | |||| | |||||||||| ||  |||||||||| ||||| |||||||||| ||||||||||||||||||||  |||||||| |||||  |    
T  33057290 ggtgccatcgtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagatcggtctattgctattgaataacccatcc 33057389  T
Q  282 tcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattg 381  Q
    ||| ||||||||||||| ||||||||||| |||||||| |||| |||||||||   ||| | |         ||||  ||| |||||||| |||||||||    
T  33057390 tctgattgttgatccaacttggtatttcacttcctggattaactatttgaatc---tcagaag---------aggaacgtgggtttgccttaatgaattg 33057477  T
Q  382 tgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctg 458  Q
    | ||| |||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  33057478 tttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctg 33057554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 185 - 461
Target Start/End: Complemental strand, 31563117 - 31562835
Alignment:
Q  185 gccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctct 284  Q
    |||| ||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||  ||||||    |||||| ||||||||||||||| ||| |    
T  31563117 gccacggaaaatactgcacaacatacaaagccaatgatatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctat 31563018  T
Q  285 tattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgt 384  Q
     ||||||||||||| | ||||||||| ||||||||  |||||| |||| |  ||| ||  | | ||||||||| ||||  | ||||| |||||||||||     
T  31563017 gattgttgatccaattcggtatttcacttcctggaacaacaatatgaaactcatccaaataggcagggtaggagtgtggatatgccttaatgaattgtgc 31562918  T
Q  385 caaccatgaaaatgtcatgctactgcaacgttccctctcac------ccaattttggacagttgaaaatgaacaatcctgtag 461  Q
    || |||||||||||||||||| |||||| | ||||||||||      ||||||| |||||||| ||||||| |||||||||||    
T  31562917 catccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgtag 31562835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 226 - 458
Target Start/End: Original strand, 33398828 - 33399042
Alignment:
Q  226 attgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttgatccaaattggtatttcatttcctggagtaaca 325  Q
    ||||||||| |||||||||  ||||||| ||||||||||||||||||||||||| | || ||||||||||||| ||||||||||| |||||||| |||||    
T  33398828 attgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactgattgttgatccaacttggtatttcacttcctggaataaca 33398927  T
Q  326 atttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcac 425  Q
    ||||||            || ||      ||||||||  || |||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  33398928 atttga------------gaggt------ggattgtggattggccagaatgaattgtatcatccatgaaaatgtcatgctactgcaacgttccctctcac 33399009  T
Q  426 ccaattttggacagttgaaaatgaacaatcctg 458  Q
    ||||||||| |||||||||||||| ||||||||    
T  33399010 ccaattttgaacagttgaaaatgaccaatcctg 33399042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 181 - 457
Target Start/End: Original strand, 33409689 - 33409959
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 280  Q
    |||||||||||||| ||   |||||| || ||||||||| |||| ||||||||||||||  |||| |||||||   || |||  ||||||| ||||||||    
T  33409689 aggtgccatggaaattaatacacaacttacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagcacccacg 33409788  T
Q  281 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaatt 380  Q
    |||| ||||||||||||| ||||||||||| |||||||||| |||||||||| |         |||     || || ||||  |||||||| |||||| |    
T  33409789 ctctgattgttgatccaacttggtatttcacttcctggagttacaatttgaagcgcc------gacaatttgttgggttgttggtttgcctgaatgaaat 33409882  T
Q  381 gtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcct 457  Q
    ||| || |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33409883 gtgccatccatgaaattgtgatgctactgcaacgttccctctcaaccaattttggacagttgaaaatgaacaatcct 33409959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 257 - 460
Target Start/End: Original strand, 33271582 - 33271782
Alignment:
Q  257 tctatttgtattgaatcacccacgctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatc-caatcaaaggacgtagggtag 355  Q
    |||||| |||| |||||||||| ||||| ||||||||||||| ||||||||||| |||||||||| | ||| |||| | || |||||          ||     
T  33271582 tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctggagttataatatgaaactcattcaaa----------taa 33271671  T
Q  356 gattgtgagtttgcctcaatgaattgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcac------ccaattttggacagttgaaaatga 449  Q
    ||||| | |||||||  |||||||||| ||| |||||||||||||| |||||||||||||||||||||||      ||||||||||||||||||||||||    
T  33271672 gattgcgggtttgccataatgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaatga 33271771  T
Q  450 acaatcctgta 460  Q
     ||||||||||    
T  33271772 ccaatcctgta 33271782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 33358644 - 33358717
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatc 254  Q
    ||||| |||||||||||| |||||||||| ||| ||||||| || |||||||||||||||| ||||||||||||    
T  33358644 aggtgtcatggaaaatactgcacaacatacaaaaccaatgacattattgttattgtcatgcctaataggagatc 33358717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 423
Target Start/End: Original strand, 33358714 - 33358849
Alignment:
Q  292 gatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcc----tcaatgaattgtgtcaa 387  Q
    ||||||| || | |||||| ||||||||||||| |||||||| | || |||  |   |||||||||| ||| |||||||    | |||||||||| |||     
T  33358714 gatccaacttagcatttcacttcctggagtaactatttgaatgctatgaaaatagtcagggtaggatggtgggtttgccagaatgaatgaattgtttcat 33358813  T
Q  388 ccatgaaaatgtcatgctactgcaacgttccctctc 423  Q
    |||||||| |||||||||||||||||||||||||||    
T  33358814 ccatgaaagtgtcatgctactgcaacgttccctctc 33358849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 33387723 - 33387792
Alignment:
Q  33 aggactctcaggggaaggagattatccataggagacatgatttggtcataacaagacctccgttgagaat 102  Q
    |||||||||  |||||| |||||||||||||| ||| |||||||||| ||||||||||||| ||||||||    
T  33387723 aggactctcgtgggaagtagattatccataggtgacttgatttggtcgtaacaagacctccattgagaat 33387792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 496 - 538
Target Start/End: Complemental strand, 31562803 - 31562761
Alignment:
Q  496 aatattggtaggagaaggaagttgaggcaaagattccaacaac 538  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  31562803 aatagtggtaggagaaggaagttgaggcaaagattccaacaac 31562761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 496 - 538
Target Start/End: Original strand, 33285644 - 33285686
Alignment:
Q  496 aatattggtaggagaaggaagttgaggcaaagattccaacaac 538  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  33285644 aatattggtaggaaaaggaagttgaggcaaagattccaacaac 33285686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 502 - 538
Target Start/End: Original strand, 33262658 - 33262694
Alignment:
Q  502 ggtaggagaaggaagttgaggcaaagattccaacaac 538  Q
    |||||||||||||||||||||||||||||||||||||    
T  33262658 ggtaggagaaggaagttgaggcaaagattccaacaac 33262694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 498 - 537
Target Start/End: Original strand, 33057597 - 33057636
Alignment:
Q  498 tattggtaggagaaggaagttgaggcaaagattccaacaa 537  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  33057597 tattggtaggaaaaggaagttgaggcaaagattccaacaa 33057636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 538
Target Start/End: Original strand, 33358893 - 33358935
Alignment:
Q  496 aatattggtaggagaaggaagttgaggcaaagattccaacaac 538  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  33358893 aatagtggtaggaaaaggaagttgaggcaaagattccaacaac 33358935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 538
Target Start/End: Original strand, 33399080 - 33399122
Alignment:
Q  496 aatattggtaggagaaggaagttgaggcaaagattccaacaac 538  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  33399080 aatagtggtaggggaaggaagttgaggcaaagattccaacaac 33399122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 538
Target Start/End: Complemental strand, 33644522 - 33644480
Alignment:
Q  496 aatattggtaggagaaggaagttgaggcaaagattccaacaac 538  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  33644522 aatagtggtaggggaaggaagttgaggcaaagattccaacaac 33644480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 501 - 538
Target Start/End: Original strand, 33410036 - 33410073
Alignment:
Q  501 tggtaggagaaggaagttgaggcaaagattccaacaac 538  Q
    |||||||| |||||||||||||||||||||||||||||    
T  33410036 tggtaggaaaaggaagttgaggcaaagattccaacaac 33410073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 538
Target Start/End: Complemental strand, 28870145 - 28870109
Alignment:
Q  502 ggtaggagaaggaagttgaggcaaagattccaacaac 538  Q
    |||||||||||||||||||||||||||||| ||||||    
T  28870145 ggtaggagaaggaagttgaggcaaagattcaaacaac 28870109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 33645000 - 33644925
Alignment:
Q  30 tataggactctcaggggaaggagattatccataggagacatgatttggtcataacaagacctccgttgagaattac 105  Q
    ||||||| ||||  |||||| |||||||||||||| ||| |||||||||| ||| |||||| || | |||||||||    
T  33645000 tataggaatctcgagggaagtagattatccataggtgacttgatttggtcgtaataagaccaccatcgagaattac 33644925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 9166311 - 9166384
Alignment:
Q  32 taggactctcaggggaaggagattatccataggagacatgatttggtcataacaagacctccgttgagaattac 105  Q
    |||||||||| ||||| | |||||||||||||| |||  |||||||||| |||||||  ||| || ||||||||    
T  9166311 taggactctcgggggaggtagattatccataggtgactggatttggtcaaaacaagaaatccattcagaattac 9166384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 538
Target Start/End: Original strand, 33271861 - 33271893
Alignment:
Q  506 ggagaaggaagttgaggcaaagattccaacaac 538  Q
    |||||||||||| ||||||||||||||||||||    
T  33271861 ggagaaggaagtcgaggcaaagattccaacaac 33271893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 33358496 - 33358556
Alignment:
Q  45 ggaaggagattatccataggagacatgatttggtcataacaagacctccgttgagaattac 105  Q
    ||||| |||||||||| ||| ||| |||||||| | ||| ||||||||| |||||||||||    
T  33358496 ggaagtagattatccacaggtgacttgatttgggcgtaataagacctccattgagaattac 33358556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 181 - 457
Target Start/End: Original strand, 355 - 631
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 280  Q
    |||||||||| ||||||| |||||| ||| |||||||||||||| ||| ||||||||||| |||| |||||||  ||||||| |||||||| |||||| |    
T  355 aggtgccatgcaaaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatg 454  T
Q  281 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaatt 380  Q
    |||| ||||||||||||  ||||||||||| ||||||||||||||||||||| |  ||  ||  ||| |  ||||||||||  |||||||| ||||||||    
T  455 ctctgattgttgatccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaatt 554  T
Q  381 gtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcct 457  Q
    || ||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||    
T  555 gtttcatccatgaaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaatcct 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 181 - 457
Target Start/End: Original strand, 6101 - 6377
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 280  Q
    |||||||||| ||||||| |||||| ||| |||||||||||||| ||| ||||||||||| |||| |||||||  ||||||| |||||||| |||||| |    
T  6101 aggtgccatgcaaaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatg 6200  T
Q  281 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaatt 380  Q
    |||| ||||||||||||  ||||||||||| ||||||||||||||||||||| |  ||  ||  ||| |  ||||||||||  |||||||| ||||||||    
T  6201 ctctgattgttgatccagcttggtatttcacttcctggagtaacaatttgaagctcatacaaatacggaccgtaggattgttggtttgcctgaatgaatt 6300  T
Q  381 gtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcct 457  Q
    || ||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||    
T  6301 gtttcatccatgaaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaatcct 6377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 162 - 464
Target Start/End: Complemental strand, 17441178 - 17440894
Alignment:
Q  162 atggaaacatccaacaatcaggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctat 261  Q
    |||||||| ||| || || |||||||||||||||||| |||||||||| ||| ||||||||||      ||||||||||| ||||||||||| |||||||    
T  17441178 atggaaacctcccacgatgaggtgccatggaaaatactgcacaacatacaaaaccaatgatat------tattgtcatgcttaataggagattggtctat 17441085  T
Q  262 ttgtattgaatcacccacgctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaat-caaaggacgtagggtaggattg 360  Q
    |  |||||||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||| ||||||| || ||||          ||| |  |    
T  17441084 tcttattgaatcacccacgctcttattgttgatccaacttggtatttcgcttcctggactaacaatatgaatcctattcaaa----------tagaaagg 17440995  T
Q  361 tgagtttgcctcaatgaattgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgta 460  Q
       |||||||| |||||||||  ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  17440994 ---gtttgccttaatgaattgcatcatccatgaaaatgtcatgctactgtaacattccctctcacccaattttggacagttgaagatgaacaatcctgta 17440898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 538
Target Start/End: Complemental strand, 17440856 - 17440820
Alignment:
Q  502 ggtaggagaaggaagttgaggcaaagattccaacaac 538  Q
    ||||||| |||||||||||||||||||||||||||||    
T  17440856 ggtaggaaaaggaagttgaggcaaagattccaacaac 17440820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 181 - 465
Target Start/End: Complemental strand, 31479305 - 31479021
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 280  Q
    ||||| ||| ||||||||  ||||||||| | |||||| ||||| |||||||||||| |||||||| |||||    |||||| ||||| ||| ||||  |    
T  31479305 aggtgtcatagaaaatactacacaacatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttg 31479206  T
Q  281 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaatt 380  Q
    |||| |||||||| |||| |||| |||||| | ||||||||||||||||||| || |||| ||||   | || || |||||  |||||||| ||||||||    
T  31479205 ctctgattgttgaaccaacttggcatttcactacctggagtaacaatttgaaccctatcagaggagtcatgggagaattgtcggtttgcctgaatgaatt 31479106  T
Q  381 gtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgtaggcca 465  Q
    || ||| ||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||| |||||||    
T  31479105 gtatcatccatgaaaatgtcatgctactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaatcctataggcca 31479021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 181 - 465
Target Start/End: Complemental strand, 31472847 - 31472560
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 280  Q
    |||||| || ||||||||  ||||||||| | | |||||||||| ||||||||||||||||||||| ||||||  ||||| | |||| |||||||||  |    
T  31472847 aggtgctatagaaaatactacacaacatatacaaccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttg 31472748  T
Q  281 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaatt 380  Q
     ||| |||||||| |||| ||||||||||| |||||||||||||||| |||||   |||| |  |   |||| |||||||||  ||||||| ||||| ||    
T  31472747 ttctgattgttgaaccaacttggtatttcacttcctggagtaacaatctgaattatatcataacagtcagggaaggattgtggatttgcctgaatgagtt 31472648  T
Q  381 gtgtcaaccatgaaaatgtcatgctactgcaac---gttccctctcacccaattttggacagttgaaaatgaacaatcctgtaggcca 465  Q
    || ||| |||||||||||||||| || ||||||   |||||||||||||||| || |||||||||||||||| |||||||||| ||||    
T  31472647 gtatcatccatgaaaatgtcatgttagtgcaacaatgttccctctcacccaaattaggacagttgaaaatgagcaatcctgtaagcca 31472560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 181 - 334
Target Start/End: Complemental strand, 31499352 - 31499199
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 280  Q
    ||||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||  ||||||| ||||||||||||||  |    
T  31499352 aggtgccatagaaaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttg 31499253  T
Q  281 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatc 334  Q
    |||| ||| || | |||| ||| ||||||| |||||||||||||||| ||||||    
T  31499252 ctctgattcttaaaccaacttgatatttcacttcctggagtaacaatatgaatc 31499199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 181 - 465
Target Start/End: Complemental strand, 31504484 - 31504206
Alignment:
Q  181 aggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacg 280  Q
    |||| |||||||||||||  ||||||||| | | |||||||||| ||| |||  |||||||||||     || | |||||||||||| ||   ||||  |    
T  31504484 aggttccatggaaaatactacacaacatacacaaccaatgatattatttttaaagtcatgcataa-----gaccagtctatttgtatggagcgacccttg 31504390  T
Q  281 ctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggt-aggattgtgagtttgcctcaatgaat 379  Q
    |||| |||||||| |||| |||||||||||||||| |||||||| ||| |||||  || |||| | || || | ||||||||| |||||||| |||||||    
T  31504389 ctctaattgttgaaccaacttggtatttcatttccaggagtaacgatt-gaatcacatgaaagta-gtcggatgaggattgtgggtttgccttaatgaat 31504292  T
Q  380 tgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgtaggcca 465  Q
    ||| ||| ||||||||||||||| ||| || | | |||||||||| ||||||| |||||||||||||| | ||||| |||| ||||    
T  31504291 tgtatcatccatgaaaatgtcattctaatgtagcattccctctcatccaatttaggacagttgaaaataagcaatcttgtacgcca 31504206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 457
Target Start/End: Original strand, 31156933 - 31157213
Alignment:
Q  180 caggtgccatggaaaataccgcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccac 279  Q
    ||||||| | ||| ||||| ||||||||   || |||||||| || ||||| |||||  | ||||||  ||||| |||| |||  ||||||||||||| |    
T  31156933 caggtgcaacggagaatactgcacaacaagcaatgccaatgaaatcattgtcattgttgtccataatctgagataggtccattcttattgaatcaccctc 31157032  T
Q  280 gctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatc---aaaggacgtagggtaggattgtgagtttgcctcaatg 376  Q
    ||||| |||||||| |||||||||||||||| |||| ||| ||||||||| |||    ||   | ||||   || | ||| ||||    |||||| |||     
T  31157033 gctctgattgttgaaccaaattggtatttcacttccaggaataacaattttaatgatgtcttcataggagaaagtggagggttgttgtcttgcctgaatc 31157132  T
Q  377 aattgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcct 457  Q
    |||||| ||| ||||||||||| ||||||| |||||  ||| |||||||||||||| |||||||||||||||| |||||||    
T  31157133 aattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaatttaggacagttgaaaatgaccaatcct 31157213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 280 - 449
Target Start/End: Original strand, 31148107 - 31148267
Alignment:
Q  280 gctcttattgttgatccaaattggtatttcatttcctggagtaacaatttgaatccaatcaaaggacgtagggtaggattgtgagtttgcctcaatgaat 379  Q
    ||||| |||||||| |||| ||||||||||| |||| ||||||||||||||||||  |||| | ||         |||||||| ||| |||  ||||| |    
T  31148107 gctctgattgttgaaccaacttggtatttcacttcccggagtaacaatttgaatcacatcagatga---------ggattgtgggttcgcccgaatgagt 31148197  T
Q  380 tgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatga 449  Q
    ||| ||| |||||||||| |||||||| | |||| |||||||||||||||||| ||||||||||||||||    
T  31148198 tgtatcatccatgaaaatatcatgctattccaacattccctctcacccaatttaggacagttgaaaatga 31148267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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