View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_47 (Length: 369)
Name: NF9388A_low_47
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 45141607 - 45141971
Alignment:
| Q |
1 |
atggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctgaatgaatttgacaacaccatggc |
100 |
Q |
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| T |
45141607 |
atggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctgaatgaatttgacaacaccatggc |
45141706 |
T |
|
| Q |
101 |
cattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagtgtagct |
200 |
Q |
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| T |
45141707 |
cattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagtgtagct |
45141806 |
T |
|
| Q |
201 |
gcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacggaa |
300 |
Q |
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| T |
45141807 |
gcctctgttgctggaaatcgtggccatgattatgttacatccaaacatggtctcttaggacttgtacgttcaacgtgtggtgagcttggagcttacggaa |
45141906 |
T |
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| Q |
301 |
ttagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagcactgaatatg |
365 |
Q |
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| T |
45141907 |
ttagagtcaattcaatctcaccgtatggtgttgccacgcctcttgcatgtagagcactgaatatg |
45141971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 45152250 - 45152612
Alignment:
| Q |
1 |
atggaaccctagacattatgtttagcaacgctggaattgaaggtggta------tgtctagcagcatactagaatttgatctgaatgaatttgacaacac |
94 |
Q |
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| T |
45152250 |
atggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgctatgtctatcagcatactaa----tgatgtaaatgaatttgacaacac |
45152345 |
T |
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| Q |
95 |
catggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagt |
194 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||| |||||||| ||||||||||||||||| || || ||| |
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| T |
45152346 |
catggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgttatggtggaaagaaaaattcgtggatccataatttgcacggctagt |
45152445 |
T |
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| Q |
195 |
gtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagctt |
294 |
Q |
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| T |
45152446 |
gtggctggctttgttgctggatgtgcaggacatgattatacaacatccaaacatggtcttataggccttgttcgctcaacgtgcagtgagcttggagctt |
45152545 |
T |
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| Q |
295 |
acggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagcactgaa |
361 |
Q |
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| T |
45152546 |
atggaataagagttaattcaatttcaccttctggtgttgccacacctcttttatgtagagcactgaa |
45152612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 57 - 359
Target Start/End: Original strand, 38256127 - 38256429
Alignment:
| Q |
57 |
agcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgg |
156 |
Q |
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||||||||||||||| | || ||||||||||||||||||||||| | || ||||||| || ||| |||||||||| ||| ||||| | ||||||| |
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| T |
38256127 |
agcatactagaatttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtgg |
38256226 |
T |
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| Q |
157 |
agagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctctt |
256 |
Q |
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| |||||||| || ||||| |||||||| || ||||||||||||| | ||||| | | | | || ||||||||| | || ||||||||||| | |
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| T |
38256227 |
aaagaaaaatacgaggatcaataatttgcacagccagtgtagctggttttgttggtagatgtgcaggacatgattatacagcatcaaaacatggtcttat |
38256326 |
T |
|
| Q |
257 |
aggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagca |
356 |
Q |
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||| ||||| | ||| | |||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||| || |||||||||||||||||| |
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| T |
38256327 |
aggccttgttaggtcagcatgcggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctcttgcatgtagagca |
38256426 |
T |
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| Q |
357 |
ctg |
359 |
Q |
| |
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||| |
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|
| T |
38256427 |
ctg |
38256429 |
T |
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