View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_48 (Length: 364)
Name: NF9388A_low_48
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 31612773 - 31613018
Alignment:
| Q |
1 |
aatatccattaatttcatgagaaaattaattaaaacaactcctaattaatgttcttaaacaatgccctaagaactcttattaccattttctgaaaagaaa |
100 |
Q |
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| T |
31612773 |
aatatccattaatttcatgagaaaattaattaaaacaaatcctaattaatgtgcttaaataatgccctgagaactcttattaccatttcctaaaaagaaa |
31612872 |
T |
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| Q |
101 |
aatcaccactcactcatcgccattgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagcagaggattatgcgtttgcggatca |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31612873 |
aatcaccactcactcatcgcctttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagcagaggattatgcgtttgcggatca |
31612972 |
T |
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| Q |
201 |
gtccccaatcctccgcttcctgtgctacctattggtttctttggat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31612973 |
gtccccaatcctccgcttcctgtgctacctattggtttctttggat |
31613018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 31608359 - 31608465
Alignment:
| Q |
123 |
ttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagcagaggattatgcgtttgcggatcagtccccaatcctccgcttcctg |
222 |
Q |
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| T |
31608359 |
ttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagctgaggattctccatttgcggatcagtccccaaaccttcgcttcctg |
31608458 |
T |
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| Q |
223 |
tgctacc |
229 |
Q |
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| T |
31608459 |
tgctacc |
31608465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 31623768 - 31623884
Alignment:
| Q |
123 |
ttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagcagaggattatgcgtttgcggatcagtccccaatcctccgcttcctg |
222 |
Q |
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| T |
31623768 |
ttgtcaagttgatcttcatcatcatcagaatcttttggtggattttttggtagctttgtaatattcgtgtgtggaccagtccccaatcctcctccacctg |
31623867 |
T |
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| Q |
223 |
tgctacctattggtttc |
239 |
Q |
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| T |
31623868 |
tgctacctggtggtttc |
31623884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31623629 - 31623693
Alignment:
| Q |
1 |
aatatccattaatttcatgagaaaattaattaaaacaactcctaattaatgttc-ttaaacaatg |
64 |
Q |
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| T |
31623629 |
aatatccattaattacatgaaaaaattaattaaaacaactcctaattaatgtgcattaaacaatg |
31623693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 31605040 - 31605099
Alignment:
| Q |
5 |
tccattaatttcatgagaaaattaattaaaacaactcctaattaatgttc-ttaaacaatg |
64 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| |
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| T |
31605040 |
tccattaatttcatgagaaaattaattaaaacaact-ctaattaatgtgctttaaacaatg |
31605099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 31605315 - 31605353
Alignment:
| Q |
204 |
cccaatcctccgcttcctgtgctacctattggtttcttt |
242 |
Q |
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| T |
31605315 |
cccaatcctccgcctcctgtgctacctattggtttcttt |
31605353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 31605227 - 31605276
Alignment:
| Q |
188 |
cgtttgcggatcagtccccaatcctccgcttcctgtgctacctattggtt |
237 |
Q |
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| T |
31605227 |
cgtttgcgcatcagtcccctttcctccgcttcctgtgctacccattggtt |
31605276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 31613080 - 31613119
Alignment:
| Q |
203 |
ccccaatcctccgcttcctgtgctacctattggtttcttt |
242 |
Q |
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||||||||||||||||||||||||||| || ||||||||| |
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| T |
31613080 |
ccccaatcctccgcttcctgtgctacccatcggtttcttt |
31613119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 31619231 - 31619264
Alignment:
| Q |
209 |
tcctccgcttcctgtgctacctattggtttcttt |
242 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
31619231 |
tcctccgcttcctgtgctacccattggtttcttt |
31619264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 31619094 - 31619130
Alignment:
| Q |
126 |
tcaagttgatcttcatcatcatcagaattttttggtg |
162 |
Q |
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||||||||||||||||| |||||||||||| |||||| |
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| T |
31619094 |
tcaagttgatcttcatcgtcatcagaatttattggtg |
31619130 |
T |
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