View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_low_52 (Length: 362)
Name: NF9388A_low_52
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_52 |
 | |
|
| [»] scaffold0433 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 3 - 356
Target Start/End: Complemental strand, 3767234 - 3766881
Alignment:
| Q |
3 |
catgacatagtgagtggaaaaaaccctacttctatcgtagttattccaccatcattaaactccaacactgcctttggttcagtccgcatgatcgacaacc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3767234 |
catgacatagtgagtggaaaaaaccctacttctatcgtagttattccaccatcattaaactccaacactgcctttggttcagtccgcatgatcgacaacc |
3767135 |
T |
|
| Q |
103 |
ctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgcttatggctat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3767134 |
ctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgcttatggctat |
3767035 |
T |
|
| Q |
203 |
gaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgattggt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3767034 |
gaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgattggt |
3766935 |
T |
|
| Q |
303 |
ggtagtggagttttcagatttgctagaggttatgctgaagctaatactcattcg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3766934 |
ggtagtggagttttcagatttgctagaggttatgctgaagctaatactcattcg |
3766881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 354
Target Start/End: Complemental strand, 3755709 - 3755355
Alignment:
| Q |
6 |
gacatagtgagtggaaaaaaccctacttctatcgtagttattccaccatcatt------aaactccaacactgcctttggttcagtccgcatgatcgaca |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||| | |||||| || | |||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
3755709 |
gacatagtgagtggaaaaaaccctacttcagttgcagttgtcccaccaccaatgaaactaaactcaaccactgcctttggttcagtccgcatgatcgaca |
3755610 |
T |
|
| Q |
100 |
accctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgcttatggc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3755609 |
accctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgcttatggc |
3755510 |
T |
|
| Q |
200 |
tatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgatt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3755509 |
tatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgatt |
3755410 |
T |
|
| Q |
300 |
ggtggtagtggagttttcagatttgctagaggttatgctgaagctaatactcatt |
354 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3755409 |
ggtggtagtggatttttcagatttgctagaggttatgctgaagctaatactcatt |
3755355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 160 - 326
Target Start/End: Complemental strand, 3770840 - 3770674
Alignment:
| Q |
160 |
atgcatctgcatgcaaagatgaagttgatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaag |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
3770840 |
atgcatctgcatgcaaagatgaagttgatttgctaatggctatgaattttgtttttactgaaggaaagtataatggaagtaaacttactattttgggaag |
3770741 |
T |
|
| Q |
260 |
gaatgctgtttttcataaagttagagagatgcctgtgattggtggtagtggagttttcagatttgct |
326 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||| |
|
|
| T |
3770740 |
gaatgttgtttttcataaagtttgagagatgcctatgattggtggtattggacttttcagatttgct |
3770674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 75 - 354
Target Start/End: Complemental strand, 3751767 - 3751488
Alignment:
| Q |
75 |
tttggttcagtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgca |
174 |
Q |
| |
|
|||||||||||| |||| | || ||||||| ||| |||||||||| |||| ||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3751767 |
tttggttcagtcaacatgtttgatgaccctttgactataggaccacaattgagttctaagcttgttggaaaagctcaaggtttctatgcatctgcatcac |
3751668 |
T |
|
| Q |
175 |
aagatgaagttgatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttca |
274 |
Q |
| |
|
||||||| ||| ||| || ||||||||||| |||||||| | |||||||||||||||||| |||||| ||||||| ||||| |||||| ||| | || | |
|
|
| T |
3751667 |
aagatgattttggttttctcatggctatgaactttgctttcattgaaggaaagtataatggtagtacaattactatcttggggaggaattctggtattaa |
3751568 |
T |
|
| Q |
275 |
taaagttagagagatgcctgtgattggtggtagtggagttttcagatttgctagaggttatgctgaagctaatactcatt |
354 |
Q |
| |
|
||| | ||||||||||||| | ||||||||||||||| ||||||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
3751567 |
taaggctagagagatgcctattattggtggtagtggacttttcagatttgctagaggatatgctaaagctactactcatt |
3751488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 89 - 354
Target Start/End: Complemental strand, 3781126 - 3780861
Alignment:
| Q |
89 |
catgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgat |
188 |
Q |
| |
|
|||||| |||||||||||||||||||||||| | ||| ||||||| ||||||||| |||||||||||||||||||||||| | |||| ||| | | | |
|
|
| T |
3781126 |
catgattgacaaccctttaactttaggaccagaactgagttctaagcttgttggaagagctcaaggattctatgcatctgcttcacaagaagaactaggt |
3781027 |
T |
|
| Q |
189 |
ttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagaga |
288 |
Q |
| |
|
|| |||||| | |||||||||||||| | |||||||||||||||||| ||||| |||||||| | || |||||| ||| || || ||||| |||| |
|
|
| T |
3781026 |
tttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtactcttactatcgtagggaggaatcctgccattaatttggttagggaga |
3780927 |
T |
|
| Q |
289 |
tgcctgtgattggtggtagtggagttttcagatttgctagaggttatgctgaagctaatactcatt |
354 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
3780926 |
tgcctgttgttggtggtagtggacttttcagatttgctagaggatatgctcaagctaatactcatt |
3780861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 75 - 354
Target Start/End: Complemental strand, 3762746 - 3762467
Alignment:
| Q |
75 |
tttggttcagtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgca |
174 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| ||||||||||| | ||| |||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3762746 |
tttggtttagtccgcatgattgacaaccctttgactttaggacccgaactgagttctaaacttgttggaagagctcaaggattctatgcatctgcatcac |
3762647 |
T |
|
| Q |
175 |
aagatgaagttgatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttca |
274 |
Q |
| |
|
| || ||| | | ||| |||||| | ||||||||||||| | |||||||||||||||||| ||||| ||||||| ||||| |||||| | | | || | |
|
|
| T |
3762646 |
aggaagaaataggttttcttatgacagtgaattttgctttcattgaaggaaagtataatggtagtactattactatcttggggaggaatccagctcttaa |
3762547 |
T |
|
| Q |
275 |
taaagttagagagatgcctgtgattggtggtagtggagttttcagatttgctagaggttatgctgaagctaatactcatt |
354 |
Q |
| |
|
||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
3762546 |
taaggttagggagatgcctgttgttggtggcagtggacttttcagatttgctagaggatatgctcaagctactactcatt |
3762467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 75 - 354
Target Start/End: Complemental strand, 3776827 - 3776548
Alignment:
| Q |
75 |
tttggttcagtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgca |
174 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||||||||||||| | |||| |||||| ||||||| | |||||||||||||||||||||||| | |
|
|
| T |
3776827 |
tttggtttagttagcatgattgacaaccctttaactttaggacccgaattgagttctaaacttgttggtagagctcaaggattctatgcatctgcttcac |
3776728 |
T |
|
| Q |
175 |
aagatgaagttgatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttca |
274 |
Q |
| |
|
| || ||| | | ||| |||||| | |||||||||||||| | |||||||||||||||||| ||||| ||||||| ||||| |||||| || | | | |
|
|
| T |
3776727 |
aggaagaaataggttttcttatgacaatgaattttgctttcattgaaggaaagtataatggtagtaccattactatcttggggaggaatcatgctcgtaa |
3776628 |
T |
|
| Q |
275 |
taaagttagagagatgcctgtgattggtggtagtggagttttcagatttgctagaggttatgctgaagctaatactcatt |
354 |
Q |
| |
|
||| ||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3776627 |
taaggttagggaaatgcctgttgttggtggtagtggacttttcagatttgctagaggttatgctgaagctactactcatt |
3776548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 75 - 338
Target Start/End: Complemental strand, 3745950 - 3745687
Alignment:
| Q |
75 |
tttggttcagtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgca |
174 |
Q |
| |
|
||||||| |||| ||| || |||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||| || ||||||||||||| | |
|
|
| T |
3745950 |
tttggtttagtcaacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaa |
3745851 |
T |
|
| Q |
175 |
aagatgaagttgatttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttca |
274 |
Q |
| |
|
| ||||| || |||| | |||||||||| ||||||||| | |||||||||||||||||| ||||| ||||||| ||||| || ||| ||| | || | |
|
|
| T |
3745850 |
aggatgagtttagtttgttcatggctatgacttttgctttcattgaaggaaagtataatgggagtactattactatcttggggagaaattctgctcttaa |
3745751 |
T |
|
| Q |
275 |
taaagttagagagatgcctgtgattggtggtagtggagttttcagatttgctagaggttatgct |
338 |
Q |
| |
|
||| ||||| || |||||| | ||||||||| ||| ||| |||||||| ||||| |||||| |
|
|
| T |
3745750 |
taaggttagggaaatgcctattgttggtggtaccggacgttttagatttgcaagaggctatgct |
3745687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 3771399 - 3771304
Alignment:
| Q |
68 |
cactgcctttggttcagtccgcatgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgc |
163 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||| ||||||| ||| |||| |
|
|
| T |
3771399 |
cactgcttttggttcagtccgcatgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgc |
3771304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 350
Target Start/End: Complemental strand, 3789176 - 3789014
Alignment:
| Q |
187 |
atttgcttatggctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagaga |
286 |
Q |
| |
|
|||| |||||| |||||| |||||||| ||||||||||||||||||||| || ||||||| | ||||| |||| || | |||| |||||||| |
|
|
| T |
3789176 |
attttcttatgattatgaactttgctttgtttgaaggaaagtataatggaagcaccattactatttcaggaag-aatgttgctaacaataaggttagaga |
3789078 |
T |
|
| Q |
287 |
gatgcctgtgattggtggtagtggagttttcagatttgctagaggttatgctgaagctaatact |
350 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||||| || ||||||||||||| |||| |
|
|
| T |
3789077 |
aatgcctgtgattggtggaagtggagtttttaggtttgctaagggatatgctgaagctagtact |
3789014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 3845115 - 3844975
Alignment:
| Q |
201 |
atgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgattg |
300 |
Q |
| |
|
||||||||||| || |||||| || ||||||||||| ||| ||||||| |||||||| |||| || | | | || |||||||| ||||||||||||| |
|
|
| T |
3845115 |
atgaattttgcattatttgaagggaaatataatggaagcacaattactatcttgggaagaaatgatgcatatgaaaaggttagagaaatgcctgtgattg |
3845016 |
T |
|
| Q |
301 |
gtggtagtggagttttcagatttgctagaggttatgctgaa |
341 |
Q |
| |
|
|||| ||||| |||| |||||||||| || ||||||||| |
|
|
| T |
3845015 |
gtggaagtgggctttttagatttgctaagggatatgctgaa |
3844975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 3851487 - 3851416
Alignment:
| Q |
274 |
ataaagttagagagatgcctgtgattggtggtagtggagttttcagatttgctagaggttatgctgaagcta |
345 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||| ||||||||| ||||||||| || ||||||||||||| |
|
|
| T |
3851487 |
ataaggttagagagttgcctgtgatcggtggtagcggagttttccgatttgctaagggatatgctgaagcta |
3851416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 338
Target Start/End: Original strand, 25985298 - 25985636
Alignment:
| Q |
3 |
catgacatagtgagtggaaaaaaccctacttctatcgtagttattccaccatcatt---aaactccaacactgcctttggttcagtccgcatgatcgaca |
99 |
Q |
| |
|
||||||||||| |||||||| |||||| |||| || | || |||||||| | || |||||| | |||||| ||||||| ||| |||||| || | |
|
|
| T |
25985298 |
catgacatagttagtggaaacaacccttcttcaataccaattgttccaccacctttgaaaaactcaaccactgcttttggtttagttaacatgattgaga |
25985397 |
T |
|
| Q |
100 |
accctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatg-caaagatgaagttgatttgcttatgg |
198 |
Q |
| |
|
|||||||||| |||||||| || |||| ||| || | ||||||||||| |||||||||||||| || ||| ||||| ||| || || | | |||| |
|
|
| T |
25985398 |
accctttaaccttaggacctcaattgagttccaaattggttggaaaagcacaaggattctatgcctcaacatcacaaag-tgaggtagaccttatcatgg |
25985496 |
T |
|
| Q |
199 |
ctatgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgat |
298 |
Q |
| |
|
|||||||||||||| | | |||||| ||||| ||||| || || | ||||| ||||| |||||| |||||| | |||| ||||| || |||||| | || |
|
|
| T |
25985497 |
ctatgaattttgctataattgaagggaagtacaatggtagcaccatcactattttggggaggaatcctgtttctgataaggttagggaaatgcctataat |
25985596 |
T |
|
| Q |
299 |
tggtggtagtggagttttcagatttgctagaggttatgct |
338 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
25985597 |
tggtggtagtggtcttttccgatttgctagaggatatgct |
25985636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 10033 - 10173
Alignment:
| Q |
201 |
atgaattttgcttttactgaaggaaagtataatggaagtacacttactatattgggaaggaatgctgtttttcataaagttagagagatgcctgtgattg |
300 |
Q |
| |
|
||||||||||| || |||||| || ||||||||||| ||| ||||||| |||||||| |||| || | | | || |||||||| ||||||||||||| |
|
|
| T |
10033 |
atgaattttgcattatttgaagggaaatataatggaagcacaattactatcttgggaagaaatgatgcatatgaaaaggttagagaaatgcctgtgattg |
10132 |
T |
|
| Q |
301 |
gtggtagtggagttttcagatttgctagaggttatgctgaa |
341 |
Q |
| |
|
|||| ||||| |||| |||||||||| || ||||||||| |
|
|
| T |
10133 |
gtggaagtgggctttttagatttgctaagggatatgctgaa |
10173 |
T |
|
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