View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_55 (Length: 358)
Name: NF9388A_low_55
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_55 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 24 - 358
Target Start/End: Original strand, 35496263 - 35496593
Alignment:
| Q |
24 |
ataaaattgctaactactagctatgggagtgagataaattccatccaaacnnnnnnnggagtgagataaacatagttgtgttctcatcactaaacctaac |
123 |
Q |
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| T |
35496263 |
ataaaagtgctaactactagctatgggagtgagataaattccatccaaacaaaaaaaggagtgagataaacatagttgtgttctcatcactaaacctaac |
35496362 |
T |
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| Q |
124 |
atatattnnnnnnnnnnnngtaaacctaacatatttaaggtagaatataatcggtaccaattcatttttgttagatgaagtaatgacgtacggaagacga |
223 |
Q |
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| T |
35496363 |
atatattaataaaaa----gtaaacctaacatatttaaggtagaatataatcggtaccaattcattttcgttggatgaagtaacgacgtacgaaagacga |
35496458 |
T |
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| Q |
224 |
attaggtaaggttgtttatatcttatccgaccctaatattagactgagctatattaacccgataaaattcaataaaatacttgtacaagttcaataggat |
323 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
35496459 |
attaggtaaagttatttatatcttatccgaccctaatattagactgagctatattaacctgataaaattcaataaagtacttgtacaagttcaataggat |
35496558 |
T |
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| Q |
324 |
gatgcaacggcactactaattgtttatatatgtga |
358 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
35496559 |
gatgcaacggcactaataattgtttatatatgtga |
35496593 |
T |
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