View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_58 (Length: 354)

Name: NF9388A_low_58
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_58
NF9388A_low_58
[»] chr4 (6 HSPs)
chr4 (22-345)||(45858795-45859114)
chr4 (38-340)||(45876731-45877023)
chr4 (196-327)||(56208539-56208670)
chr4 (190-334)||(47293456-47293600)
chr4 (190-328)||(55705881-55706019)
chr4 (215-323)||(54304249-54304357)
[»] chr5 (3 HSPs)
chr5 (190-335)||(35854542-35854687)
chr5 (190-266)||(35802504-35802580)
chr5 (192-323)||(10521303-10521434)
[»] chr2 (2 HSPs)
chr2 (185-326)||(24357450-24357591)
chr2 (40-102)||(24357314-24357376)
[»] chr8 (2 HSPs)
chr8 (189-328)||(7972083-7972222)
chr8 (190-323)||(7961718-7961851)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 45859114 - 45858795
Alignment:
Q  22 aagagaacagaaaatgtttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgttttaaatttatttaagaaaaatctattttcc 121  Q
    ||||||||| | |||| ||||||||||||||||||||||||||| || ||  || | |||||||||||||||||||||||||||||||||||||||||||    
T  45859114 aagagaacacagaatgcttataaacaatttcgagacaaagctgccctttcccgagctatgactgtatgttttaaatttatttaagaaaaatctattttcc 45859015  T
Q  122 atgttttctgttcttccttctcgtatatccatccaatagttacttacagctactgtcttgtcactaggtagacaagatggaaaaggttgcacaggggagg 221  Q
    ||| ||| |||||||||| || |||||||||    |||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||| ||||    
T  45859014 atgctttatgttcttcctccttgtatatcca----atagttacttaccgctactgtcctgtcactaggtagacaagatggaagaggctgcacaggagagg 45858919  T
Q  222 gtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgatatacctc 321  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||    
T  45858918 gtttggaccggtaaggatgcagtatctcatggtctggttgatgctattggtgggctatcacgtgctattgctatagccaaattgaaggccaatatacctc 45858819  T
Q  322 aagacagtcaggttgatttaagaa 345  Q
    |||| | |||||||||||| ||||    
T  45858818 aagataatcaggttgatttcagaa 45858795  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 38 - 340
Target Start/End: Complemental strand, 45877023 - 45876731
Alignment:
Q  38 tttataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgttttaaatttatttaagaaaaatctattttccatgttttctgttcttc 137  Q
    |||||||||||||||| || || || ||| | || |||||||||||||||||||||||||| ||  |||||||| ||||||||  |||||||||||||||    
T  45877023 tttataaacaatttcgtgataaggcggctttttccagatcaatgactgtatgttttaaattcatacaagaaaaagctattttc--tgttttctgttcttc 45876926  T
Q  138 cttctcgtatatccatccaatagttacttacagctactgtcttgtcactaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaagg 237  Q
    |  ||  ||| ||||    ||||||||    ||||||| ||  ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  45876925 ccccttctatgtcca----atagttac----agctactatcccgtcgctaggtagacaagatggaagaggttgcacaagggagggtttggaccggtaagg 45876834  T
Q  238 atgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgatatacctcaagacagtcaggttga 337  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||  |||||||||||||||| ||||||||    
T  45876833 atgcagcatcccatggtttggttgatgctattggtgggctatctcgtgctattgctatagcaaaattgaaagctaatatacctcaagacagacaggttga 45876734  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 196 - 327
Target Start/End: Complemental strand, 56208670 - 56208539
Alignment:
Q  196 agatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctat 295  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  56208670 agatggaagaggttgcacaggggagggtttagaccggtaaagatgcactatctcttggtttggttgatgctattggtgggctatctcgtgctattgctat 56208571  T
Q  296 agccaaactgaaggccgatatacctcaagaca 327  Q
    ||| ||| ||||||| | ||||||||||||||    
T  56208570 agcaaaattgaaggctggtatacctcaagaca 56208539  T

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Target: chr4; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 190 - 334
Target Start/End: Original strand, 47293456 - 47293600
Alignment:
Q  190 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 289  Q
    |||||||||||||| ||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||  |||| || |||||    
T  47293456 tagacaagatggaagaggttgcacagggaaggatttggaccagtaaggacgcagtatctcatggtttggttgatgctattggtggactatcgcgcgctat 47293555  T
Q  290 tgctatagccaaactgaaggccgatatacctcaagacagtcaggt 334  Q
    ||||||||| ||| |||||||| ||||||||||| |||| |||||    
T  47293556 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggt 47293600  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 328
Target Start/End: Original strand, 55705881 - 55706019
Alignment:
Q  190 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 289  Q
    |||||||||||||| ||||||| || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  55705881 tagacaagatggaagaggttgcgcatgggagggtttggaccggtaaagacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 55705980  T
Q  290 tgctatagccaaactgaaggccgatatacctcaagacag 328  Q
    ||||||  | ||| |||| ||  ||||||||||| ||||    
T  55705981 tgctattacaaaattgaaagctaatatacctcaaaacag 55706019  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 54304249 - 54304357
Alignment:
Q  215 ggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattgctatagccaaactgaaggccgat 314  Q
    ||||| ||||||||| |||||||| |||  |||||  |||||||||||||||||||| ||| | |||||||||||||||||||| ||| |||||||| ||    
T  54304249 ggggaaggtttggactggtaaggacgcaacatctctcggtttggttgatgctattggcgggatgtctcgtgctattgctatagcaaaattgaaggccaat 54304348  T
Q  315 atacctcaa 323  Q
    |||||||||    
T  54304349 atacctcaa 54304357  T

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Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 190 - 335
Target Start/End: Original strand, 35854542 - 35854687
Alignment:
Q  190 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 289  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  35854542 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgctattggtgggatatcgcgtgctat 35854641  T
Q  290 tgctatagccaaactgaaggccgatatacctcaagacagtcaggtt 335  Q
    ||||||||| ||| |||||||| ||||||||||| |||| ||||||    
T  35854642 tgctatagcaaaattgaaggccaatatacctcaaaacagacaggtt 35854687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 35802580 - 35802504
Alignment:
Q  190 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgct 266  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  35802580 tagacaagatgaaaaaggttgcacatgggaggatttggaccggtaaggacgcagcatctcatggtttggttgatgct 35802504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 323
Target Start/End: Original strand, 10521303 - 10521434
Alignment:
Q  192 gacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctattg 291  Q
    ||||||||| || || || ||||  ||||| |||||| ||| ||||| |||| |||||| |||||||||||||||||||||||| |||| ||||||||||    
T  10521303 gacaagatgaaagagattccacataggaggatttggatcgggaaggacgcagcatctcaaggtttggttgatgctattggtgggatatcgcgtgctattg 10521402  T
Q  292 ctatagccaaactgaaggccgatatacctcaa 323  Q
    |||| || ||| | |||||| |||||||||||    
T  10521403 ctatcgcaaaattcaaggccaatatacctcaa 10521434  T

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Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 185 - 326
Target Start/End: Original strand, 24357450 - 24357591
Alignment:
Q  185 ctaggtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgt 284  Q
    |||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||  | || ||     
T  24357450 ctaggtggacaagatggagaaggtagcacaggggagagtttggactggtaaagatgcagcatcacatggtttggttgatgctattggtggcctttcccga 24357549  T
Q  285 gctattgctatagccaaactgaaggccgatatacctcaagac 326  Q
    |||||||| ||||| ||| |||||||| ||||||||||||||    
T  24357550 gctattgccatagcaaaattgaaggccaatatacctcaagac 24357591  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 24357314 - 24357376
Alignment:
Q  40 tataaacaatttcgagacaaagctgctctgtctagatcaatgactgtatgttttaaatttatt 102  Q
    |||||||||||||||||||| || ||| | || ||||| ||||||||||||| ||||||||||    
T  24357314 tataaacaatttcgagacaaggcagctttatccagatctatgactgtatgttctaaatttatt 24357376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 7972222 - 7972083
Alignment:
Q  189 gtagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgcta 288  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||||||||| ||||||||  ||||  |||| |||||||    
T  7972222 gtagacaagatggaagaggttgcacagaggaggatttggaccggtaaagatgcagtatctaatggtttggtcgatgctatcagtggactatcgcgtgcta 7972123  T
Q  289 ttgctatagccaaactgaaggccgatatacctcaagacag 328  Q
    |||||||||| ||| |||||||| || | |||||| ||||    
T  7972122 ttgctatagcaaaattgaaggccaatcttcctcaaaacag 7972083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 190 - 323
Target Start/End: Complemental strand, 7961851 - 7961718
Alignment:
Q  190 tagacaagatggaaaaggttgcacaggggagggtttggaccggtaaggatgcagtatctcatggtttggttgatgctattggtgggttatctcgtgctat 289  Q
    |||||||||||||| |||||||||| |||||  ||||||| ||||| |||||| ||||| ||| |||||| ||||||||||||||  |||| |  |||||    
T  7961851 tagacaagatggaagaggttgcacaagggagaatttggactggtaaagatgcaatatctaatgatttggtcgatgctattggtggaatatcgcacgctat 7961752  T
Q  290 tgctatagccaaactgaaggccgatatacctcaa 323  Q
    ||||||||| ||| |||||||| |||| ||||||    
T  7961751 tgctatagcaaaattgaaggccaatattcctcaa 7961718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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