View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_59 (Length: 354)
Name: NF9388A_low_59
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 6118590 - 6118251
Alignment:
| Q |
10 |
atgatatggcatctcatatgttttctcttgcatgtttagaaggaaacaacaaaagaacaagaacaagaaagtatgagaacaagatcttccgctttgtggg |
109 |
Q |
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| T |
6118590 |
atgatatggcatctcatatgttttctcttgcatgtttagaaggaaacaacaaaagaacaagaacaagaaagtatgagaacaagatcttccgctttgtggg |
6118491 |
T |
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| Q |
110 |
agaagtatacgcggttttgaggtaatgatttttattattatgaaattggtgtttttaatgattgaattgtattcaggtagtttttgttaaataggtttag |
209 |
Q |
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| T |
6118490 |
agaagtatacgtggttttgaggtaatgatttttattattatgaaattggtgtttttaatgattgaattgtattcaggtagtttttgttaaataggtttgg |
6118391 |
T |
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| Q |
210 |
atttcatnnnnnnnntcagaattttctttaatgaatcagttttgcattgtatttcgaaaacatggcattttcactaggcacgtaagacttgcttagcaaa |
309 |
Q |
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| T |
6118390 |
atctcataaaaaaaatcagaattttctttaatgaatcagttttgcattgtatttcgaaaacatggcattttcactaggcacataagacttgcctagcaaa |
6118291 |
T |
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| Q |
310 |
tattccaatatttcagaacggatgcaaattctaaattttt |
349 |
Q |
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| T |
6118290 |
tattccaatatttcagaacggatgcaaattctaaattttt |
6118251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 6123248 - 6123068
Alignment:
| Q |
13 |
atatggcatctcatatgttttctcttgcatgtttagaaggaaacaacaaaagaacaagaacaagaaagtatgagaacaagatcttccgctttgtgggaga |
112 |
Q |
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| T |
6123248 |
atatggcatctcatatgttttctcatgcatgtttagaaggaaacaacaaaagaacaagaacaagaaagtatgagaacaagatcttcctctttgtgggaga |
6123149 |
T |
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| Q |
113 |
agtatacgcggttttgaggtaatgatttttattattatgaaattggtgtttttaatgattgaattgtattcaggtagtttt |
193 |
Q |
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| T |
6123148 |
agtatacgtggttttgaggtaataatttttattgttatgaaattggtctttttaatgattgaattgtatttaggtagtttt |
6123068 |
T |
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