View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_60 (Length: 353)

Name: NF9388A_low_60
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_60
NF9388A_low_60
[»] chr2 (2 HSPs)
chr2 (288-333)||(2744397-2744442)
chr2 (288-333)||(45682451-45682496)
[»] chr4 (2 HSPs)
chr4 (287-333)||(2464933-2464979)
chr4 (288-333)||(6736143-6736188)
[»] scaffold0312 (1 HSPs)
scaffold0312 (288-333)||(19446-19491)
[»] chr6 (3 HSPs)
chr6 (288-333)||(29935513-29935558)
chr6 (288-331)||(29875168-29875211)
chr6 (287-335)||(31291762-31291810)
[»] chr1 (1 HSPs)
chr1 (288-333)||(411079-411124)
[»] chr8 (1 HSPs)
chr8 (288-335)||(21542414-21542461)
[»] chr3 (1 HSPs)
chr3 (288-330)||(10539968-10540010)


Alignment Details
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 2744442 - 2744397
Alignment:
Q  288 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacact 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2744442 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacact 2744397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 45682496 - 45682451
Alignment:
Q  288 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacact 333  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||    
T  45682496 tgtcacgacccaatctcaggtcatgaccggcgtacaggctaacact 45682451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 2464979 - 2464933
Alignment:
Q  287 gtgtcacgacccaatttcaggtcatgaccggcgcacaggctaacact 333  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  2464979 gtgtcacgacccaattttaggtcatgaccggcgcacaggctaacact 2464933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 6736143 - 6736188
Alignment:
Q  288 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacact 333  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  6736143 tgtcacgacccaatttcaagtcatgaccggcgcacaggctaacact 6736188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 19491 - 19446
Alignment:
Q  288 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacact 333  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  19491 tgtcacgacccaatttcaggccatgaccggcgcacaggctaacact 19446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 29935558 - 29935513
Alignment:
Q  288 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacact 333  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  29935558 tgtcacgacccaatttcaggtcatgaccggcgcataggctaacact 29935513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 29875211 - 29875168
Alignment:
Q  288 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaaca 331  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||    
T  29875211 tgtcacgacccaatctcagatcatgaccggcgcacagactaaca 29875168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 31291762 - 31291810
Alignment:
Q  287 gtgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactga 335  Q
    ||||||||||||||| ||| || |||||||||| | |||||||||||||    
T  31291762 gtgtcacgacccaatctcaagttatgaccggcgtataggctaacactga 31291810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 411079 - 411124
Alignment:
Q  288 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacact 333  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  411079 tgtcacgacccaatttcaggccatgaccggcgcacaggctaacact 411124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 21542461 - 21542414
Alignment:
Q  288 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaacactga 335  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  21542461 tgtcacgacccaatctcagatcatgaccggcgcacaggctaacactga 21542414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 10540010 - 10539968
Alignment:
Q  288 tgtcacgacccaatttcaggtcatgaccggcgcacaggctaac 330  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||    
T  10540010 tgtcacgacccaattttaggccatgaccggcgcataggctaac 10539968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University