View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_61 (Length: 353)
Name: NF9388A_low_61
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 347
Target Start/End: Original strand, 20486897 - 20487240
Alignment:
| Q |
4 |
atggtatgaaagactgtcattaatctcatgttaatatattgtctaatgaaagacgttgtcattactaataaattctatgatgttttgacaagttatacct |
103 |
Q |
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| T |
20486897 |
atggtatgaaagattgtcattaatcccatgttaatatattgtctaatgaaagacgttgtcattactaataaattctatgatgttttgacaggctatacct |
20486996 |
T |
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| Q |
104 |
ttgaaatgctagaaggatccatatatgttggcactctcaacgtttgcgaatgatccttaagtcaacgctgcactgactttctagttgctgaagatggcgg |
203 |
Q |
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| T |
20486997 |
ctgaaacgctagaaggatccatatatgttggcactcccaacgtttgcgaaagatccttaagtcaaggctgcactgactttctggttgctgaagatggtgg |
20487096 |
T |
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| Q |
204 |
ttgtttcatattgttgagactctttccagacctccaatgcatacaatagacattgtcctgactgggggaagataatttttcaatggtaatggtcatatta |
303 |
Q |
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| T |
20487097 |
ttgtttcatattgttgagactctttccagacctccaatgcatacaatagacattgtcctgactgagggaagataatttttcaatggtaatggtcatattg |
20487196 |
T |
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| Q |
304 |
tcccactggacgtgtcaaatttgtcaatggaagcgtgaacttta |
347 |
Q |
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| T |
20487197 |
tcccactggacatgtcaaatttgtcaatggaagcgtgaatttta |
20487240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 21770729 - 21770689
Alignment:
| Q |
30 |
catgttaatatattgtctaatgaaagacgttgtcattacta |
70 |
Q |
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| T |
21770729 |
catgtcaatatgatgtctaatgaaagacgttgtcattacta |
21770689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 9510195 - 9510135
Alignment:
| Q |
177 |
tgactttctagttgctgaagatggcggttgtttcatattgttgagactctttccagacctc |
237 |
Q |
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|||| ||||||||| ||| |||| ||||| |||||| ||||||||||||||||| ||||| |
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| T |
9510195 |
tgaccttctagttgttgatgatgaaggttgattcatactgttgagactctttccaaacctc |
9510135 |
T |
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