View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_62 (Length: 353)

Name: NF9388A_low_62
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_62
NF9388A_low_62
[»] chr3 (29 HSPs)
chr3 (6-353)||(41985502-41985852)
chr3 (8-353)||(41980728-41981073)
chr3 (125-264)||(9494822-9494961)
chr3 (111-269)||(9407324-9407482)
chr3 (114-274)||(9425526-9425686)
chr3 (111-249)||(9343823-9343961)
chr3 (6-227)||(9448314-9448535)
chr3 (111-259)||(9329804-9329952)
chr3 (111-267)||(9617463-9617619)
chr3 (111-259)||(9336508-9336656)
chr3 (111-269)||(9397743-9397903)
chr3 (114-246)||(9655360-9655492)
chr3 (111-259)||(9695616-9695764)
chr3 (114-246)||(9646367-9646499)
chr3 (125-257)||(9352871-9353003)
chr3 (111-271)||(9432852-9433012)
chr3 (111-266)||(9416534-9416689)
chr3 (126-219)||(9340679-9340772)
chr3 (164-257)||(9377056-9377149)
chr3 (167-262)||(9614009-9614104)
chr3 (119-257)||(9626488-9626626)
chr3 (145-245)||(9441815-9441915)
chr3 (126-257)||(9347957-9348088)
chr3 (126-257)||(9369611-9369742)
chr3 (105-226)||(9756381-9756502)
chr3 (111-159)||(9686751-9686799)
chr3 (303-351)||(16011844-16011892)
chr3 (306-353)||(9695838-9695885)
chr3 (197-226)||(16011768-16011797)
[»] chr8 (3 HSPs)
chr8 (6-353)||(44688680-44689027)
chr8 (6-171)||(13170579-13170744)
chr8 (231-347)||(13170758-13170874)
[»] chr1 (8 HSPs)
chr1 (6-318)||(18991113-18991422)
chr1 (116-267)||(4428591-4428742)
chr1 (160-267)||(4439820-4439927)
chr1 (129-245)||(235195-235311)
chr1 (134-249)||(8814385-8814500)
chr1 (136-253)||(246841-246958)
chr1 (129-232)||(251412-251515)
chr1 (134-219)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (114-257)||(20694304-20694447)
[»] chr6 (7 HSPs)
chr6 (111-259)||(7041464-7041612)
chr6 (129-265)||(7046801-7046937)
chr6 (129-257)||(7025720-7025854)
chr6 (129-257)||(7012784-7012918)
chr6 (129-190)||(7029850-7029911)
chr6 (131-256)||(9159515-9159646)
chr6 (129-256)||(9170782-9170915)
[»] chr7 (3 HSPs)
chr7 (124-256)||(3695661-3695792)
chr7 (111-219)||(450111-450219)
chr7 (303-351)||(450315-450363)
[»] chr5 (2 HSPs)
chr5 (125-249)||(18571086-18571213)
chr5 (129-256)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 353
Target Start/End: Complemental strand, 41985852 - 41985502
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatgg 102  Q
    ||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41985852 atggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggtttccccggtgaagatgg 41985753  T
Q  103 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985752 tttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcg 41985653  T
Q  203 ttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattcaacgattttgaccagatgctttgtgggatgt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41985652 ttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattctacgattttgaccagatgctttgtgggatgt 41985553  T
Q  303 gtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcctg 353  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  41985552 gtgtttttcacttggatcaatgttgggtttcccctttgtctgattatcctg 41985502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 353
Target Start/End: Complemental strand, 41981073 - 41980728
Alignment:
Q  8 ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtttaa 107  Q
    ||||||||  ||||||||||||||||||||||| |||| || |||||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||| |    
T  41981073 ggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgggttccctggtgaagatggtttca 41980974  T
Q  108 agcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttc 207  Q
    | ||||||||||| || |||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  41980973 atcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagtttaggggatagagttttgttcttggggaatggatgttcgttttt 41980874  T
Q  208 tgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattcaacgattttgaccagatgctttgtgggatgtgtgtt 307  Q
    ||||||||||||  |||||||||||||||||||||||||| | ||||||  || ||||||||||  |  |||| || | ||||| |||||||||||| ||    
T  41980873 tgcttctgcttcaaatttgtctgttgtcaaaggaaattgtattatctttgttggtgatgcattcctcccttttaacaaaatgctatgtgggatgtgtatt 41980774  T
Q  308 tttcacttggatcaatgccgggtttcccctttgtctgattatcctg 353  Q
    ||||||||||||||| | || |||||||||||||| ||||||||||    
T  41980773 tttcacttggatcaaggtcgtgtttcccctttgtccgattatcctg 41980728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 125 - 264
Target Start/End: Original strand, 9494822 - 9494961
Alignment:
Q  125 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 224  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatt 9494921  T
Q  225 tgtctgttgtcaaaggaaattgtgtcatctttagtgatga 264  Q
    |||  |||  |||||| |||||||||||||||| ||||||    
T  9494922 tgtgcgtttccaaagggaattgtgtcatctttattgatga 9494961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 111 - 269
Target Start/End: Complemental strand, 9407482 - 9407324
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||||||||| |||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  211 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcat 269  Q
    ||| ||||||||||||| ||||| |||||| ||||||||| |||||| |||||||||||    
T  9407382 ttcagcttcggatttgtgtgttgccaaagggaattgtgtcttctttattgatgatgcat 9407324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 114 - 274
Target Start/End: Complemental strand, 9425686 - 9425526
Alignment:
Q  114 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 213  Q
    ||||||| |||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| |||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T
Q  214 tgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattcaac 274  Q
     ||||||||||||| ||||| |||||| ||||||||||||||||  |||||||||| ||||    
T  9425586 agcttcggatttgtgtgttgccaaagggaattgtgtcatctttatcgatgatgcatacaac 9425526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 111 - 249
Target Start/End: Complemental strand, 9343961 - 9343823
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||||||||| |  |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  211 ttctgcttcggatttgtctgttgtcaaaggaaattgtgt 249  Q
    ||||||||||||||||| ||||   | ||||||||||||    
T  9343861 ttctgcttcggatttgtgtgttcctagaggaaattgtgt 9343823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 9448535 - 9448314
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    ||||||||||||| |||||| | || || || ||| | || ||||||||||| ||||| ||||| | |  |||||| |  ||||| |||   |||| | |    
T  9448535 atggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgctat 9448436  T
Q  106 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 205  Q
    || | |||||||||| |  ||| |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  |||||||||    
T  9448435 aagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttt 9448336  T
Q  206 tctgcttctgcttcggatttgt 227  Q
    ||||||||||||||||||||||    
T  9448335 tctgcttctgcttcggatttgt 9448314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 9329952 - 9329804
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||||||||| || ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  211 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 259  Q
    ||||||||| || |||  | ||| ||| || ||||||||||||| ||||    
T  9329852 ttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagt 9329804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 111 - 267
Target Start/End: Original strand, 9617463 - 9617619
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||| ||||||||  || ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||||||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgc 9617562  T
Q  211 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgc 267  Q
    ||||||||| ||||||| ||||  |||||| |||||||||||||||| ||| |||||    
T  9617563 ttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttattgacgatgc 9617619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 9336656 - 9336508
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  211 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 259  Q
    ||||||||| || |||  | ||| ||| || ||||||||||||| ||||    
T  9336556 ttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagt 9336508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 269
Target Start/End: Complemental strand, 9397903 - 9397743
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaa--tgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttct 208  Q
    |||||||||| |||||||| |||||| | || |||  || || ||||||  ||||||||||||||| || |||||||| | |||||||||||| |||||     
T  9397903 ttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttcc 9397804  T
Q  209 gcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcat 269  Q
    ||||| |||| |||||||| ||||| |||||| ||||||||| |||||| |||||||||||    
T  9397803 gcttcagctttggatttgtgtgttgccaaagggaattgtgtcgtctttattgatgatgcat 9397743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 246
Target Start/End: Original strand, 9655360 - 9655492
Alignment:
Q  114 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 213  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | ||||||||||||||||| ||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatc 9655459  T
Q  214 tgcttcggatttgtctgttgtcaaaggaaattg 246  Q
     ||||||||||||| ||||  |||||| |||||    
T  9655460 agcttcggatttgtgtgtttccaaagggaattg 9655492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 259
Target Start/End: Original strand, 9695616 - 9695764
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  211 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 259  Q
     |||||||| || |||| |||||  || || ||||||||||||| ||||    
T  9695716 atctgcttcagagttgtgtgttgcaaatgggaattgtgtcatctatagt 9695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 114 - 246
Target Start/End: Original strand, 9646367 - 9646499
Alignment:
Q  114 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 213  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | ||||||||||||||||| ||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatc 9646466  T
Q  214 tgcttcggatttgtctgttgtcaaaggaaattg 246  Q
     ||||||||||||| ||||  |||||| |||||    
T  9646467 agcttcggatttgtgtgtttccaaagggaattg 9646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 9353003 - 9352871
Alignment:
Q  125 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 224  Q
    |||||||||| ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| ||||||||||||||||||||||| || ||||     
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggttgggatc 9352904  T
Q  225 tgtctgttgtcaaaggaaattgtgtcatcttta 257  Q
    ||| | ||  |||||||||||||||||||||||    
T  9352903 tgtgtcttcccaaaggaaattgtgtcatcttta 9352871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 271
Target Start/End: Complemental strand, 9433012 - 9432852
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    ||||||| |||||||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  211 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattc 271  Q
    ||| || |||||||||| ||||  | |||| |||||| ||||||||| |||||||| ||||    
T  9432912 ttcagcctcggatttgtgtgtttccgaagggaattgtatcatctttattgatgatgtattc 9432852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 266
Target Start/End: Complemental strand, 9416689 - 9416534
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  211 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 266  Q
    ||| || | |||| ||| ||||   ||||| ||||||||  |||||| ||||||||    
T  9416589 ttcagccttggatatgtgtgttactaaagggaattgtgttgtctttattgatgatg 9416534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 9340772 - 9340679
Alignment:
Q  126 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 219  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  |||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 9377149 - 9377056
Alignment:
Q  164 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 257  Q
    |||||||||||  |||||||  |||||| ||||||||||||| |||||||||||| |||| ||| | ||  |||||||||||||||||||||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggatctgtgtcttcccaaaggaaattgtgtcatcttta 9377056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 9614009 - 9614104
Alignment:
Q  167 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgat 262  Q
    |||||||  ||||| |||||||||| ||||||||| ||||||||||||||||| ||| ||| | ||  ||||||||||||||| ||||||| ||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatctttattgat 9614104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 257
Target Start/End: Original strand, 9626488 - 9626626
Alignment:
Q  119 ttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgctt 218  Q
    |||||| || |||||||||||||||||||||| || |||  || |||||||||||| |||||||| || || || |||   || |||||||| || ||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagctt 9626587  T
Q  219 cggatttgtctgttgtcaaaggaaattgtgtcatcttta 257  Q
    ||||||||| ||||  |||||| |||||  |||||||||    
T  9626588 cggatttgtgtgtttccaaagggaattgcatcatcttta 9626626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 9441815 - 9441915
Alignment:
Q  145 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaat 244  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||| || | |||| ||| |||||||||||| |||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgtcaaagggaat 9441914  T
Q  245 t 245  Q
    |    
T  9441915 t 9441915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 9348088 - 9347957
Alignment:
Q  126 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggattt 225  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||||||||||||||| ||| |    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9347989  T
Q  226 gtctgttgtcaaaggaaattgtgtcatcttta 257  Q
     | | ||   ||||||||||||||| ||||||    
T  9347988 atgtattccgaaaggaaattgtgtcgtcttta 9347957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 9369742 - 9369611
Alignment:
Q  126 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggattt 225  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||||||||||||||| ||| |    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9369643  T
Q  226 gtctgttgtcaaaggaaattgtgtcatcttta 257  Q
     | | ||   ||||||||||||||| ||||||    
T  9369642 atgtattccgaaaggaaattgtgtcgtcttta 9369611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 9756502 - 9756381
Alignment:
Q  105 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 204  Q
    ||||| |||||||||  || ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| ||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcatt 9756403  T
Q  205 ttctgcttctgcttcggatttg 226  Q
     ||||| ||||| |||||||||    
T  9756402 ctctgcatctgcatcggatttg 9756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggc 159  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 16011844 - 16011892
Alignment:
Q  303 gtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcc 351  Q
    |||||||||||||||||||| | ||| |||| |||||||||||||||||    
T  16011844 gtgtttttcacttggatcaaggtcggatttcacctttgtctgattatcc 16011892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 9695838 - 9695885
Alignment:
Q  306 tttttcacttggatcaatgccgggtttcccctttgtctgattatcctg 353  Q
    ||||||||||||||||| | |||||||| |||||||||| ||||||||    
T  9695838 tttttcacttggatcaaggtcgggtttcacctttgtctggttatcctg 9695885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 16011768 - 16011797
Alignment:
Q  197 tgttcgttttctgcttctgcttcggatttg 226  Q
    ||||||||||||||||||||||||||||||    
T  16011768 tgttcgttttctgcttctgcttcggatttg 16011797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 6 - 353
Target Start/End: Original strand, 44688680 - 44689027
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    ||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||| |    
T  44688680 atggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttcccgggtgaagatggtct 44688779  T
Q  106 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 205  Q
    |  ||||||||||||||  ||  |||||||| | ||||||||||| |||||  ||||||||||| ||||| |||||||||||||||||| || ||| |||    
T  44688780 acggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttggggaatgaatattcattt 44688879  T
Q  206 tctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattcaacgattttgaccagatgctttgtgggatgtgtg 305  Q
    ||| || ||||||||||||||||| ||| |||||| |||||||| ||||| | |  |||  | |||||| |||||||| | |||||||||||||||||||    
T  44688880 tctactactgcttcggatttgtctattgccaaagggaattgtgtaatcttcacttgtgaatccttcaactattttgacgatatgctttgtgggatgtgtg 44688979  T
Q  306 tttttcacttggatcaatgccgggtttcccctttgtctgattatcctg 353  Q
    ||||||||||||||||| || | |||||||||||||| ||||||||||    
T  44688980 tttttcacttggatcaacgcagagtttcccctttgtccgattatcctg 44689027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 13170579 - 13170744
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    |||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| ||||| |||  ||||||||||||||| |||||||    
T  13170579 atggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcatcgttacggtttccctggtgaatatggttt 13170678  T
Q  106 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttagggga 171  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13170679 aaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagggga 13170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 231 - 347
Target Start/End: Original strand, 13170758 - 13170874
Alignment:
Q  231 ttgtcaaaggaaattgtgtcatctttagtgatgatgcattcaacgattttgaccagatgctttgtgggatgtgtgtttttcacttggatcaatgccgggt 330  Q
    ||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  13170758 ttgtcaaaggaaattgtgtcatctttagtgatgatgcattccactatgttgacgagatgctttgtgggatgtgtgtttttcacttggatcaatgccggct 13170857  T
Q  331 ttcccctttgtctgatt 347  Q
    ||||||||| |||||||    
T  13170858 ttcccctttatctgatt 13170874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 318
Target Start/End: Complemental strand, 18991422 - 18991113
Alignment:
Q  6 atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggttt 105  Q
    |||||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| | |||||| ||||||||||| |||||||| ||| | ||| |    
T  18991422 atggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgggttccctggcgaaaaaggtct 18991323  T
Q  106 aaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttt 205  Q
    ||| ||  | ||||| || ||| ||||||   ||||| |||||   | || |  ||| |||||| |||| ||||||||||||||||||||||||||||||    
T  18991322 aaaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaatagggttttgttcttggggaatggatgttcgttt 18991226  T
Q  206 tctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattcaacgattttgaccagatgctttgtgggatgtgtg 305  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||| |||||| ||| ||||| |||| |  ||||||  | ||||  |||||||||||||    
T  18991225 tctgcttctgcttctgatttatctgttgtcaaagggaattgtgtcgtctttattgacgatgcgttcatcccttttgataacatgcgatgtgggatgtgtg 18991126  T
Q  306 tttttcacttgga 318  Q
    ||||| |||||||    
T  18991125 tttttgacttgga 18991113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 116 - 267
Target Start/End: Complemental strand, 4428742 - 4428591
Alignment:
Q  116 gtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 215  Q
    ||||| || ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctg 4428643  T
Q  216 cttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgc 267  Q
    |||| || |||||||||   ||||| |||||||||||||||| |||||||||    
T  4428642 cttctgagttgtctgttactaaagggaattgtgtcatctttattgatgatgc 4428591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 160 - 267
Target Start/End: Complemental strand, 4439927 - 4439820
Alignment:
Q  160 gagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 259  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| |||||||||||||||| |    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttatt 4439828  T
Q  260 gatgatgc 267  Q
    ||||||||    
T  4439827 gatgatgc 4439820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 235311 - 235195
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 228  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||||     
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgcttcggatttgtg 235212  T
Q  229 tgttgtcaaaggaaatt 245  Q
    ||||  |||||| ||||    
T  235211 tgttcccaaagggaatt 235195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 8814385 - 8814500
Alignment:
Q  134 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttg 233  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||      ||||| |||||||||||||||| |||||||| ||||     
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatttgtgtgttc 8814484  T
Q  234 tcaaaggaaattgtgt 249  Q
     |||||| ||||||||    
T  8814485 ccaaagggaattgtgt 8814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 246958 - 246841
Alignment:
Q  136 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtc 235  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||      || || |||||||||||||||| |||||||| ||||  |    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcattttctgcttctgctttggatttgtgtgttcac 246859  T
Q  236 aaaggaaattgtgtcatc 253  Q
    ||||| ||||||||||||    
T  246858 aaagggaattgtgtcatc 246841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 251412 - 251515
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 228  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||     |||||| ||||||| |||||| ||||||||||     
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatttgtg 251511  T
Q  229 tgtt 232  Q
    ||||    
T  251512 tgtt 251515  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 231674 - 231589
Alignment:
Q  134 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 219  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| |||||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 114 - 257
Target Start/End: Original strand, 20694304 - 20694447
Alignment:
Q  114 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 213  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  214 tgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 257  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||    
T  20694404 tgcttcggatttgtgtgttgccaaagggaattgtgtcatcttta 20694447  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 7041612 - 7041464
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    ||||| |||| | |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  211 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 259  Q
    |||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  7041512 ttctgcttcggatttgtgcgttgccaaagggaattgtgtcatctttagt 7041464  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 265
Target Start/End: Complemental strand, 7046937 - 7046801
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 228  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||||||||||  ||| |||||||     
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgta 7046838  T
Q  229 tgttgtcaaaggaaattgtgtcatctttagtgatgat 265  Q
    ||||| |||||| |||||||| ||| |||||| ||||    
T  7046837 tgttgccaaagggaattgtgtgatcattagtgctgat 7046801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 129 - 257
Target Start/End: Complemental strand, 7025854 - 7025720
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 222  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||   ||      ||||||||||||||||| |||||| ||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggtatgttcgttttctgcttgtgcttcaga 7025755  T
Q  223 tttgtctgttgtcaaaggaaattgtgtcatcttta 257  Q
    ||||| ||||| |||||| |||| |||||||||||    
T  7025754 tttgtgtgttgccaaagggaattctgtcatcttta 7025720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 257
Target Start/End: Complemental strand, 7012918 - 7012784
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 222  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||   ||      ||||||||||||||| | |||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgttttctgcctgtgcttcgga 7012819  T
Q  223 tttgtctgttgtcaaaggaaattgtgtcatcttta 257  Q
    ||||| ||||| |||||| |||| |||||||||||    
T  7012818 tttgtgtgttgccaaagggaattctgtcatcttta 7012784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 190  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 9159515 - 9159646
Alignment:
Q  131 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcggatt 224  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||   ||      || ||||||||||| ||||||||| ||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcagatt 9159614  T
Q  225 tgtctgttgtcaaaggaaattgtgtcatcttt 256  Q
    ||| ||||  |||||| |||||| ||||||||    
T  9159615 tgtgtgtttccaaagggaattgtatcatcttt 9159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 256
Target Start/End: Complemental strand, 9170915 - 9170782
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 222  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||   ||      || ||||||||||| ||||||||| ||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcaga 9170816  T
Q  223 tttgtctgttgtcaaaggaaattgtgtcatcttt 256  Q
    ||||| ||||  | |||| |||||| ||||||||    
T  9170815 tttgtgtgtttcccaagggaattgtatcatcttt 9170782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 256
Target Start/End: Complemental strand, 3695792 - 3695661
Alignment:
Q  124 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 223  Q
    |||| |||||||| ||||||| ||  ||||||||  ||||||||||||||||||||||||||| || |    |||||| |||||||||  ||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggat 3695694  T
Q  224 ttgtctgttgtcaaaggaaattgtgtcatcttt 256  Q
    ||||||| || |||||| |||||||| ||||||    
T  3695693 ttgtctgctgccaaagggaattgtgtgatcttt 3695661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 450111 - 450219
Alignment:
Q  111 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 210  Q
    |||||||||| || ||||||||||||||||| || ||||||||||||  || |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 450210  T
Q  211 ttctgcttc 219  Q
    |||||||||    
T  450211 ttctgcttc 450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 450315 - 450363
Alignment:
Q  303 gtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcc 351  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||||    
T  450315 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatcc 450363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 18571213 - 18571086
Alignment:
Q  125 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt---ttgttcttggggaatggatgttcgttttctgcttctgcttcgg 221  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||   |||||||| || |  | | |||| ||||||  |||||||||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctgcttcgg 18571114  T
Q  222 atttgtctgttgtcaaaggaaattgtgt 249  Q
    |||||| ||||  |||||| ||||||||    
T  18571113 atttgtgtgtttccaaagggaattgtgt 18571086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 256
Target Start/End: Complemental strand, 33541750 - 33541623
Alignment:
Q  129 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 228  Q
    |||||||||||| | | ||||| |||||   ||||||||| ||||  ||||||||||| |||  ||  ||||| |||||||| |||||||| ||||||||    
T  33541750 atgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttccttttctgcatctgcttctgatttgtc 33541651  T
Q  229 tgttgtcaaaggaaattgtgtcatcttt 256  Q
     |||| |||||| ||||||||| |||||    
T  33541650 cgttgccaaaggtaattgtgtcctcttt 33541623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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