View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_64 (Length: 349)

Name: NF9388A_low_64
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_64
NF9388A_low_64
[»] chr2 (11 HSPs)
chr2 (21-345)||(39217273-39217597)
chr2 (209-345)||(39372205-39372341)
chr2 (211-327)||(39379482-39379598)
chr2 (209-345)||(39179715-39179851)
chr2 (209-345)||(39396156-39396292)
chr2 (209-345)||(39386259-39386395)
chr2 (207-332)||(39425211-39425336)
chr2 (209-320)||(39159389-39159500)
chr2 (85-295)||(39188300-39188510)
chr2 (206-325)||(39493005-39493124)
chr2 (207-295)||(39145159-39145247)
[»] chr6 (1 HSPs)
chr6 (209-345)||(16115262-16115398)
[»] chr5 (1 HSPs)
chr5 (209-282)||(33563382-33563455)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 345
Target Start/End: Original strand, 39217273 - 39217597
Alignment:
Q  21 gaggaagaattgacattttagtgttgatgactggaaaatggaataaacttgaaatttatctttttatgtatctcttctatcatccaaatgttttgataaa 120  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39217273 gaggaagaattgacattttagtgttgatgattggaaaatggaataaacttgaaatttatctttttatgtatctcttctatcatccaaatgttttgataaa 39217372  T
Q  121 ttttcaaatagccggtccaatttgcctagttttttgttaattggaacttattttatgtctattctggtaagtttttggtggtgaaaattttcttgcacct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39217373 ttttcaaatagccggtccaatttgcctagttttttgttaattggaacttattttatgtctattctggtaagtttttgatggtgaaaattttcttgcacct 39217472  T
Q  221 tgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaataatcaactagttgat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39217473 tgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaataatcaactagttgat 39217572  T
Q  321 ctcttgcgagaattcgtccagaatg 345  Q
    |||||||||||||||||||||||||    
T  39217573 ctcttgcgagaattcgtccagaatg 39217597  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 209 - 345
Target Start/End: Original strand, 39372205 - 39372341
Alignment:
Q  209 tttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaataat 308  Q
    ||||||||||||||||| ||||||| |||||||||||||||  || |||||||||| |||||||||||||| || |||||| ||||||||  |||| |||    
T  39372205 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattcatttctgcatataacttggccaacaagaat 39372304  T
Q  309 caactagttgatctcttgcgagaattcgtccagaatg 345  Q
     |||||||||||||||||| ||||  |||||||||||    
T  39372305 aaactagttgatctcttgcaagaacacgtccagaatg 39372341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 211 - 327
Target Start/End: Complemental strand, 39379598 - 39379482
Alignment:
Q  211 tcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaataatca 310  Q
    ||||||||||||||| ||||||| |||||||||| | ||  || |||||||||| ||||||||||||||||| |||||| |||||||||||||| | | |    
T  39379598 tcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaatttgttgtagctgttagattcagttgtgcatataacttggctgacaagactaa 39379499  T
Q  311 actagttgatctcttgc 327  Q
    || ||||||||||||||    
T  39379498 acaagttgatctcttgc 39379482  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 345
Target Start/End: Original strand, 39179715 - 39179851
Alignment:
Q  209 tttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaataat 308  Q
    ||||||||| ||||||| |||||||||| ||||||| |  |  || ||| |||||| ||||||||||||||||| |||||| ||||||| ||||||  ||    
T  39179715 tttcttgcatcttgcagattttgttaagcatcttatcaacaggaagcaaattgttgcagctgttagattcagttgtgcatataacttggatgacaaggat 39179814  T
Q  309 caactagttgatctcttgcgagaattcgtccagaatg 345  Q
    ||  |||||||| | |||||||||  |||||||||||    
T  39179815 catttagttgatatgttgcgagaacacgtccagaatg 39179851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 345
Target Start/End: Complemental strand, 39396292 - 39396156
Alignment:
Q  209 tttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaataat 308  Q
    |||||||  ||| |||| ||||||||| |||||||| |||| ||| || ||||||| ||||||||||||||||| ||| || |||||||||||| | |||    
T  39396292 tttcttgttcctcgcagattttgttaaaaatcttatcaggagaaagcagtttgttgtagctgttagattcagttgtgcgtataacttggctgacgaaaat 39396193  T
Q  309 caactagttgatctcttgcgagaattcgtccagaatg 345  Q
    |||  | ||||| | |||||||||  |||||||||||    
T  39396192 caatcaattgatatgttgcgagaacacgtccagaatg 39396156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 345
Target Start/End: Complemental strand, 39386395 - 39386259
Alignment:
Q  209 tttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaataat 308  Q
    ||||||||| ||| ||| |||||||||| ||||||| | ||  || |||||||||| ||||||||||||||||| |||||| |||||||  ||||| |||    
T  39386395 tttcttgcatcttccagattttgttaagcatcttatcaagaggaagcaatttgttgaagctgttagattcagttgtgcatataacttggacgacaagaat 39386296  T
Q  309 caactagttgatctcttgcgagaattcgtccagaatg 345  Q
    | | |||||| | | |||||||||  | |||||||||    
T  39386295 cgattagttggtatgttgcgagaacacatccagaatg 39386259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 332
Target Start/End: Complemental strand, 39425336 - 39425211
Alignment:
Q  207 attttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaata 306  Q
    ||||||||||||||||||| ||||||| | ||||| |  | || | |||||| ||||| |||||||  |||||||| |||||  ||||||    ||||||    
T  39425336 attttcttgcaccttgcagattttgttgataatctgagaaagagagaacaatatgttgaagctgtttcattcagttgtgcatttaacttgagcaacaata 39425237  T
Q  307 atcaactagttgatctcttgcgagaa 332  Q
    ||||| ||||||||||||||||||||    
T  39425236 atcaattagttgatctcttgcgagaa 39425211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 39159389 - 39159500
Alignment:
Q  209 tttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaataat 308  Q
    ||||||| |||||| || ||||||||| |||||||||| ||  || |||  |  || ||||||||||||||||| |||||| ||||||||| |||| |||    
T  39159389 tttcttgtaccttgtagattttgttaaaaatcttattatgaggaagcaaactactgaagctgttagattcagttgtgcatataacttggcttacaagaat 39159488  T
Q  309 caactagttgat 320  Q
     ||||| |||||    
T  39159489 taactaattgat 39159500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 295
Target Start/End: Complemental strand, 39188510 - 39188300
Alignment:
Q  85 tatgtatctcttctatcatccaaatgttttgataaattttcaaatagccggtccaatttgcctagttttttgttaattggaacttattttatgtctattc 184  Q
    ||||||| ||||||||  | |||||| ||||| || |||| || ||  | ||||||| |||  || |||||||||| | |||||||||||||  || |||    
T  39188510 tatgtatttcttctatttttcaaatggtttgacaacttttgaactattcagtccaatctgctaagatttttgttaactagaacttattttatagctgttc 39188411  T
Q  185 tggtaagtttttggtggtgaaa-attttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagtta 283  Q
    |||| |||||| | || ||  | |||||||||||||| |||| ||||||  ||| |||||| | |||| | |||| || || |||||||||||||||||     
T  39188410 tggtcagttttag-tgatgtgagattttcttgcacctggcagattttgtacagagtcttatcaagaaacagcaatatgatgaagctgttagattcagttg 39188312  T
Q  284 tgcatacaactt 295  Q
    |||||| |||||    
T  39188311 tgcatataactt 39188300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 325
Target Start/End: Complemental strand, 39493124 - 39493005
Alignment:
Q  206 aattttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaat 305  Q
    ||||||||| ||||||||||||||||| ||||||||||| | | ||   |||| || || |||||| ||||||||   || ||| |||||    ||||||    
T  39493124 aattttcttacaccttgcaggttttgtcaagaatcttatcaagcaacggcaatatgatgaagctgtcagattcagccgtgtatataacttcagcgacaat 39493025  T
Q  306 aatcaactagttgatctctt 325  Q
    ||||||||||||||||||||    
T  39493024 aatcaactagttgatctctt 39493005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 39145159 - 39145247
Alignment:
Q  207 attttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaactt 295  Q
    |||||||||||||| |||| ||||||  ||| |||||| | || | | |||| || || ||||||||||||||||| |||||| |||||    
T  39145159 attttcttgcacctagcagattttgtacagagtcttatcaagagacagcaatatgatgaagctgttagattcagttgtgcatataactt 39145247  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 209 - 345
Target Start/End: Original strand, 16115262 - 16115398
Alignment:
Q  209 tttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagttatgcatacaacttggctgacaataat 308  Q
    ||||||| ||||||||| |||||||||  ||||||| |||| ||| |||||||||| ||||||||||||||| | |||||| |||||||||||||| ||     
T  16115262 tttcttgtaccttgcagattttgttaaatatcttatcaggagaaagcaatttgttgaagctgttagattcagctgtgcatataacttggctgacaagaac 16115361  T
Q  309 caactagttgatctcttgcgagaattcgtccagaatg 345  Q
    ||| || ||||| | |||||||||  |||||||||||    
T  16115362 caattaattgatatgttgcgagaacacgtccagaatg 16115398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 33563382 - 33563455
Alignment:
Q  209 tttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattcagtt 282  Q
    ||||||||| ||||||| |||||||||| ||||||| |  |  || ||| |||||| |||||||||||||||||    
T  33563382 tttcttgcatcttgcagattttgttaagcatcttatcaacaggaagcaaattgttgcagctgttagattcagtt 33563455  T

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