View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_66 (Length: 342)
Name: NF9388A_low_66
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 33086805 - 33086622
Alignment:
| Q |
20 |
atcaagtgatgcctttccatttccattcattggacctatggaatattactgcatcaatgtcaacattgattttgattggtccagttttattgagttttct |
119 |
Q |
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| T |
33086805 |
atcaagtgatgcctttccatttccatttattggacctatggaatattactgcatcaatgtcaacattgattttgattggtccagttttattgagttttct |
33086706 |
T |
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| Q |
120 |
tatcaagctggcaaatgacaatcaaaatca--gagaacaatataaacaaaagaagaacgaaagttgaatagaaactttgcctta |
201 |
Q |
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| T |
33086705 |
tatcaagctggcaaatgacaatcaaaatcagagagaacaatataaacaaaagaagaacgaaagttgaatagaaactttgcctta |
33086622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 245 - 342
Target Start/End: Complemental strand, 33086578 - 33086481
Alignment:
| Q |
245 |
agggcttgttcaaattacttttcttattttaaaatctagtttagatatatcaaaggccaaccaatgaaggaatgttcttcgaatatcgtagagggtac |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33086578 |
agggcttgttcaaattacttttcttattttaaaatctagtttagatatatcaaaggccaaccaatgaaggaatgttcttcgaatatcgtagagggtac |
33086481 |
T |
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