View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_low_68 (Length: 338)
Name: NF9388A_low_68
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_68 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 338
Target Start/End: Complemental strand, 7447498 - 7447155
Alignment:
| Q |
7 |
aaatatagcattgataatttgatgagcttaaaacacacgacacatgaatatatacatcttatagaaggtgacaaaaactaaagtagtggataccatacga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7447498 |
aaatatagcattgataatttgatgagcttaaaacacacgacacatgaatatatacatcttatagaaggtgacaaaaactaaagtagtggataccatacca |
7447399 |
T |
|
| Q |
107 |
tttggagtcaaaatgaaaatcattatgttaatggatatatatgttcccaaatcatagttaaataaacacactagctaatagcaaacaattaatttacata |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7447398 |
tttggagtcaaaatgaaaatcattatgttaatggatatatatgttcccaaatcatagttaaataaacacactagctagtagcaaacaattaatttacata |
7447299 |
T |
|
| Q |
207 |
ttgggatcattcacattatgtacaaatgcaatattattattactaatatattcttaatt---------------agtacaaacttatccattccatgcca |
291 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
7447298 |
ttgggatcattcacattatgtacaaatgcta---tattattactaatatattctttttttttttttcttctacatgtacaaacttatccattccatgcca |
7447202 |
T |
|
| Q |
292 |
ttgtagtaacatgtttcattagccatgaaaaatacgtgatcatcata |
338 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
7447201 |
ttgtagtaacatgtttcattgggcatgaaaaatacgtcgtcatcata |
7447155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University