View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_70 (Length: 337)
Name: NF9388A_low_70
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_70 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 38928264 - 38928583
Alignment:
| Q |
18 |
acatcaacgattagtagaaaagaaaagtggggcaagtaatacaaaaacttattaatacttttcaaattcttcatatagttcacaccatcatcatctttcc |
117 |
Q |
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| T |
38928264 |
acatcaacgattagtagaaaagaaaagtggggcaagtaatacaaaaacttattaatacttttcaaattcttcatatagttcacaccatcatcatctttcc |
38928363 |
T |
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| Q |
118 |
aaattaaattaacatcacacagcagtgatttccatttccattctatacaatagtattaaaaaagacatgacattataaatactaatacagatttaggagc |
217 |
Q |
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| T |
38928364 |
aaattaaattaacatcacacagtagtgatttccatttccattctatacaatagtattaaaaaagacatgacattataaatactaatacagatttaggagc |
38928463 |
T |
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| Q |
218 |
aagcatgattagccaaggagaaatgtttggcttgagaagcagcagcaacctcagaaacaaaaccttgcatcaccaaagtcttaacctgccatggcttata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38928464 |
aagcatgattagccaaggagaaatgtttggcttgagaagcagcagcaacctcagaaacaaaaccttgcatcaccaaagtcttaacctgccatggcttata |
38928563 |
T |
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| Q |
318 |
aggaaaaccttgtcttgcat |
337 |
Q |
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|||||||||||||||||||| |
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| T |
38928564 |
aggaaaaccttgtcttgcat |
38928583 |
T |
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