View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_72 (Length: 334)
Name: NF9388A_low_72
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 22 - 322
Target Start/End: Original strand, 25940317 - 25940617
Alignment:
| Q |
22 |
ccaccaacgctcatacagtaagttatgcatttccctttttaatattattgtgttttttggaccataaatatgatgaattcgatgtgaaattaaattgaaa |
121 |
Q |
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| T |
25940317 |
ccaccaacgctcatacagtaagttatgcatttccctttttaatattattgtgttttttggaccataaatatgatgaattcgatgtgaaattaaattgaaa |
25940416 |
T |
|
| Q |
122 |
actatagtataaatttttccttttcctctagtttatcaattcactgttcattcttgagtatcaccagtagagttagggcatgggtttttggtaacaacca |
221 |
Q |
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| T |
25940417 |
actatagtataaatttttccttttcctctagtttatcaattcacttttcattcttgagtatcaccagtagagttagggcatgggtttttggtaacaacca |
25940516 |
T |
|
| Q |
222 |
attttgttcctgaatttgactgtgtgagaggctgtagttagagtattgaatgtatcaaaattgcaaatacatcctcacgggtcacatttatttgtaattt |
321 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25940517 |
attttgttcctgaatttgactgtgtgagaagctgtagttagagtattgaatgtatcaaaattgcaaatacatcctcacgggtcacctttatttgtaattt |
25940616 |
T |
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| Q |
322 |
t |
322 |
Q |
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| T |
25940617 |
t |
25940617 |
T |
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