View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_73 (Length: 329)
Name: NF9388A_low_73
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 5230428 - 5230326
Alignment:
| Q |
5 |
caccagtatctaaacttacagccatttgagcaaaccatttggtataagcttttccaggagcaccaatttcccactccactggtccatactcattttctat |
104 |
Q |
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| T |
5230428 |
caccagtatctagacctacagccatttgagcagcccattttgtgtaagcctttccaggagcaccaatttcccattccacaggtccatactcattctcaat |
5230329 |
T |
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| Q |
105 |
cta |
107 |
Q |
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| T |
5230328 |
cta |
5230326 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 52549229 - 52549290
Alignment:
| Q |
256 |
ttaaaataggaatacaatcatacaaatatatttaaatcacatttccttgcctgagacagaat |
317 |
Q |
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| T |
52549229 |
ttaaaataggaatacaattatacaaatatatttaaatcacatttccttgcctgagacagaat |
52549290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 52549112 - 52549164
Alignment:
| Q |
139 |
attatgatcattattgctgcaataatgtaattggccagcttaaacctttctag |
191 |
Q |
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| T |
52549112 |
attatgatcattattactgcaataatgtaattggccagcttaaacctttctag |
52549164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 17125478 - 17125401
Alignment:
| Q |
21 |
tacagccatttgagcaaaccatttggtataagcttttccaggagcaccaatttcccactccactggtccatactcatt |
98 |
Q |
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| T |
17125478 |
tacagccatttgagaaaaccatttggtgtaagattttccaggtgcaccaatttcccattccactggtccatactcatt |
17125401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 42989374 - 42989443
Alignment:
| Q |
39 |
ccatttggtataagcttttccaggagcaccaatttcccactccactggtccatactcattttctatctac |
108 |
Q |
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| T |
42989374 |
ccatttggtgtaggatttaccaggagcaccaatttcatactccataggtccatattcattttcaatctac |
42989443 |
T |
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