View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9388A_low_76 (Length: 324)
Name: NF9388A_low_76
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_76 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 45513291 - 45512977
Alignment:
| Q |
5 |
accagggatgacaagttcgtgaaagcatgaggtatttgaccataaagcccattgtaagaaaggtcaagaagggtaagtttctcaaagtgactgaaccata |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45513291 |
accagggatgacaagttcgtgaaagcatgaggtatttgaccataaagcccattataagaaaggtcaagaagggtaagtttctcaaagtgaccgaaccata |
45513192 |
T |
|
| Q |
105 |
atggaatagaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctcatttgatga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45513191 |
atggaatagaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctcatttgatga |
45513092 |
T |
|
| Q |
205 |
gagatcaagatagataagagatgtcatgttttggaaagcataacgaggaatgagtgaattgtcaactctacatccagacagtgaaagatttaataaagaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45513091 |
gagatcaagatagataagagatgtcatgttttggaaagcataacgaggaatgagtgaattgtcaactctacatccagacagtgaaagatttaataaagaa |
45512992 |
T |
|
| Q |
305 |
ggaagtgtattgagt |
319 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
45512991 |
ggaagtgtattgagt |
45512977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 45513624 - 45513524
Alignment:
| Q |
98 |
aaccataatggaatagaagtgaaattatttccagaaaggtagagtgattcaatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctcat |
197 |
Q |
| |
|
|||||| ||||||| ||||| ||| ||||| ||||||| || ||||||| ||||||||||||| |||| | | ||||| |||||||||||||||| |
|
|
| T |
45513624 |
aaccatgatggaattgaagttaaactatttttagaaaggctaaggtattcaattgaagtcatgtttcgaaaaacccctggaattggaccatgaagctcat |
45513525 |
T |
|
| Q |
198 |
t |
198 |
Q |
| |
|
| |
|
|
| T |
45513524 |
t |
45513524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University