View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_77 (Length: 322)
Name: NF9388A_low_77
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_77 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 322
Target Start/End: Complemental strand, 3569257 - 3568943
Alignment:
| Q |
3 |
catgaccatgattg-atcgcaatttaaaactttgaccaaaacattgtattctagtcaatgatgtgtgcttttggagacttgaacattaccttggctcctt |
101 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3569257 |
catgaccatgattggatcgcaatttaaaaccttgaccaaaacattgcattctagtcaatgatgtgtgcttttggagacttgaacattaccctggctcctt |
3569158 |
T |
|
| Q |
102 |
gcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaacacttgtcttttagctg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3569157 |
gcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaacgcttgtcttttagctg |
3569058 |
T |
|
| Q |
202 |
cctgttctattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgtgtggataaaagaagtaataatag |
301 |
Q |
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| T |
3569057 |
cctgttctattcctgagcaagctcgttgtgaggtttaaaacaaccattggcatccaagttcccc------ttcttgtgtggataatagatgttatcatag |
3568964 |
T |
|
| Q |
302 |
ggtatacatccaataggacct |
322 |
Q |
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|||| ||||||||||||||| |
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| T |
3568963 |
ggtaagcatccaataggacct |
3568943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 86 - 322
Target Start/End: Complemental strand, 14341058 - 14340821
Alignment:
| Q |
86 |
attaccttggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaac |
185 |
Q |
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| T |
14341058 |
attaccttggctccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagctgaaac |
14340959 |
T |
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| Q |
186 |
acttg-tcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgtgtggat |
284 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14340958 |
acttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttcttgtgtggat |
14340859 |
T |
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| Q |
285 |
aaaagaagtaataatagggtatacatccaataggacct |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
14340858 |
aaaagaagtaataatagggtatacatccaataggacct |
14340821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 80 - 322
Target Start/End: Complemental strand, 3602184 - 3601941
Alignment:
| Q |
80 |
ttgaacattaccttggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagc |
179 |
Q |
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|||||||||||||||| ||||||| |||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3602184 |
ttgaacattaccttggttccttgcattgctgataagtgtatatttgaccgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagc |
3602085 |
T |
|
| Q |
180 |
tgaaacacttg-tcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgt |
278 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602084 |
tgaaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttctcgttcttgt |
3601985 |
T |
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| Q |
279 |
gtggataaaagaagtaataatagggtatacatccaataggacct |
322 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3601984 |
gtggataaaagaagtaataatagggtatacattcaataggacct |
3601941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 269
Target Start/End: Complemental strand, 3591322 - 3591052
Alignment:
| Q |
3 |
catgaccatgattg-atcgcaatttaaaactttgaccaaaacattgtattctagtcaatgatgtgtgcttttggagacttgaacattaccttggc--tcc |
99 |
Q |
| |
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|||||||||||||| ||| ||||||||||| ||||| || |||||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||| |
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| T |
3591322 |
catgaccatgattggatcacaatttaaaaccttgacaaatacattgcattctagtcaatgatgtattcttttggagacttgaacattaccttggtattcc |
3591223 |
T |
|
| Q |
100 |
ttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaacactt-gtcttttag |
198 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3591222 |
ttgcgttgctgataagtttatattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaacacttggtcttttag |
3591123 |
T |
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| Q |
199 |
ctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttct |
269 |
Q |
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|| || ||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3591122 |
ctaccagttatattcttgagcaagcttattgtgaggtttaacacagccattggcatctaagttacccttct |
3591052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 1409653 - 1409397
Alignment:
| Q |
14 |
ttgatcgcaatttaaaactttgaccaaaacattgtattctagtcaatgatgtgtgcttttggagacttgaacattaccttggctccttgcgttgctgata |
113 |
Q |
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||||||||||| ||||| ||| |||| ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||| ||| |
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| T |
1409653 |
ttgatcgcaatacaaaaccttggccaagacattatattctagtcaatgatgtgtgctttttgagtcttgaacattaccttggctctttgcattgctaata |
1409554 |
T |
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| Q |
114 |
agtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctgaaacac-ttgtcttttagctgcctgttctatt |
212 |
Q |
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||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| |
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| T |
1409553 |
agtttatatttggctgtgtacacatcaacatatgtaaacttggctaatggaaactttcgccttagctgaaacactttgtcttttagctgcctgttatatt |
1409454 |
T |
|
| Q |
213 |
cctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttct |
269 |
Q |
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| ||||||||||| ||||||||| |||||||||||| | |||||||||||||||||| |
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| T |
1409453 |
cttgagcaagctcattgtgaggtataacacagccatagacatccaagttacccttct |
1409397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 269
Target Start/End: Complemental strand, 1412630 - 1412443
Alignment:
| Q |
83 |
aacattaccttggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagctga |
182 |
Q |
| |
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||||| |||| |||||||||| |||||||| |||| ||||| || |||| | ||||||||||||||||||||| | | | ||||||||||| | | |
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| T |
1412630 |
aacatcacctcggctccttgcattgctgattagttcatatttggctttgtacatatcaacatatgtaaatttggcctgtaggagttttctccttagataa |
1412531 |
T |
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| Q |
183 |
aacactt-gtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttacccttct |
269 |
Q |
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|||||| ||| ||||||| | |||| |||| ||||| | | ||| |||||||| |||||||||||||| || | ||||||||||| |
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| T |
1412530 |
gacacttggtcctttagcttcttgttaaattcttgagctattttgttctgaggtttcacacagccattggcgtctaggttacccttct |
1412443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 1417306 - 1417191
Alignment:
| Q |
41 |
aacattgtattctagtcaatgatgtgtgcttttggagacttgaacattaccttggctccttgcgttgctgataagtttctattttactgtgtaaacatca |
140 |
Q |
| |
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||||||| |||||| |||||| ||| | ||||| |||||| || || |||||||||| |||| |||||||| |||| | ||| || |||| | |||| |
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| T |
1417306 |
aacattgcattctactcaatggtgttttcttttaaagacttaaa-atcaccttggctctttgcattgctgattagttcatgtttggctttgtacatatca |
1417208 |
T |
|
| Q |
141 |
acatatgtaaatttggc |
157 |
Q |
| |
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||||||||||||||||| |
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| T |
1417207 |
acatatgtaaatttggc |
1417191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 1421747 - 1421679
Alignment:
| Q |
89 |
accttggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggc |
157 |
Q |
| |
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|||||||||| |||| |||||||| |||| ||||| || |||| | ||||||||||||||||||||| |
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| T |
1421747 |
accttggctctttgcattgctgattagttcatatttagctttgtacatatcaacatatgtaaatttggc |
1421679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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