View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_8 (Length: 490)
Name: NF9388A_low_8
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_8 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Complemental strand, 17701395 - 17700925
Alignment:
| Q |
17 |
acatcatgaacaaacactattcttcaccttcttctcaccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatga |
116 |
Q |
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| T |
17701395 |
acatcatgaacaaacactattcttcaccttcttctcaccattcgtttgataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatga |
17701296 |
T |
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| Q |
117 |
taagaaaaacccaggttcaagaatctacagttgtgagttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttc |
216 |
Q |
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| T |
17701295 |
taagaaaaacccaggttcaagaatctacagttgtgagttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcc |
17701196 |
T |
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| Q |
217 |
tctaagattcttgttcaacttgaaacaaacaaacagatccacgatcatgatgtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttt |
316 |
Q |
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| T |
17701195 |
tcgaagattcttgttcaacctgaaacaaacaaacagatccatgatcatgatgtgaataacggcggcaccttgaagaagactataaaaattacttgtgttt |
17701096 |
T |
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| Q |
317 |
tttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatgcttt |
416 |
Q |
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| T |
17701095 |
tttcttcttctcttcacaaccatgatcatgat---gatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtatttttatccaacaatgcttt |
17700999 |
T |
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| Q |
417 |
gaagggacatatgagatggcatacgccaaagggtttgaagaagggtactattattcactcaccgactgcccaat |
490 |
Q |
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| T |
17700998 |
gaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaat |
17700925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Original strand, 17662684 - 17663151
Alignment:
| Q |
17 |
acatcatgaacaaacactattcttcaccttcttctcaccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatga |
116 |
Q |
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| T |
17662684 |
acatcatgaacaaaccctattcttcaccttcttctcaccattcgtttcataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatga |
17662783 |
T |
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| Q |
117 |
taagaaaaacccaggttcaagaatctacagttgtgagttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttc |
216 |
Q |
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| T |
17662784 |
taagaaaaacccaggttcaagaatctacaattgtgagttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcc |
17662883 |
T |
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| Q |
217 |
tctaagattcttgttcaacttgaaacaaacaaacagatccacgatcatgatgtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttt |
316 |
Q |
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| T |
17662884 |
tctaagattcttgttcaacctgaaacaaacaaacagatccgtgatcatgatgtgaataacggcggcaccttgaagaagactacaaaaattacttgtgttt |
17662983 |
T |
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| Q |
317 |
tttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatgcttt |
416 |
Q |
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| T |
17662984 |
tttcttcttctcttcacaaccatgatc---atgatgattggaaaccgaagaaccatacaagtgatgtttgtcacaaggtattttcatccaacactgcttt |
17663080 |
T |
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| Q |
417 |
gaagggacatatgagatggcatacgccaaagggtttgaagaagggtactattattcactcaccgactgccc |
487 |
Q |
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| T |
17663081 |
gaagggacatatgagatggcatactccaaagggtttgaagaaggatactattattccctcactgactgccc |
17663151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 313 - 487
Target Start/End: Complemental strand, 21900125 - 21899954
Alignment:
| Q |
313 |
gttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatg |
412 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
21900125 |
gttttttcttcttctcttcacaatcataatcatgatgatt---ggaaactgaagaaccatacatgtgatgtttgtaacaaggttttttcgtccaacaatg |
21900029 |
T |
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| Q |
413 |
ctttgaagggacatatgagatggcatacgccaaagggtttgaagaagggtactattattcactcaccgactgccc |
487 |
Q |
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| T |
21900028 |
ctttgaacgggcatatgagatggcatactcaaaagggttcgaagaatggtgttattaaccacccaccgactgccc |
21899954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 22667820 - 22667771
Alignment:
| Q |
24 |
gaacaaacactattcttcaccttcttctcaccattcctttgataaaccca |
73 |
Q |
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| T |
22667820 |
gaacaaacactattcttcaccttcttctcattattcgtttgataaaccca |
22667771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 22667110 - 22667050
Alignment:
| Q |
65 |
ataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgataagaaaaa |
125 |
Q |
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| T |
22667110 |
ataaacccaacaacagccatgatcaagatcaccaagagactcttgaaactgatatgaaaaa |
22667050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 434
Target Start/End: Complemental strand, 38227637 - 38227577
Alignment:
| Q |
374 |
catgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatg |
434 |
Q |
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| T |
38227637 |
catgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatg |
38227577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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