View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_86 (Length: 314)
Name: NF9388A_low_86
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_86 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 68 - 300
Target Start/End: Original strand, 1045396 - 1045618
Alignment:
| Q |
68 |
actctataaaattgttacattatttacaatcaataaaatattaattttaccatcaaaatctaactaaaaaacttatttcacaagaaaaatcatattttta |
167 |
Q |
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| T |
1045396 |
actctataaaattgttacattatttacaatcaataaaatattaattttaccatcaaaatctaactaaaaaacttatttcacaagaaaaatcatattttta |
1045495 |
T |
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| Q |
168 |
gatcgatagtagtattcatcgtcttctcagtttcattttaggttctgcataagtgcatcatcgaagctcctacccttcgcgaaaacaattcaattataac |
267 |
Q |
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| T |
1045496 |
gatcgatagtagtattcatcgtcttctcagtttcattttcggttat----------accatcgaagcttctacccatggcgaaaacaattcaattataac |
1045585 |
T |
|
| Q |
268 |
gaaaccctctcactatacggtacgatctgttct |
300 |
Q |
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| T |
1045586 |
gacaccctctcactataaggtacgatcttttct |
1045618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 18569039 - 18569081
Alignment:
| Q |
28 |
ttaatagaaccttcaccctagaatccacctatttaatttcact |
70 |
Q |
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| T |
18569039 |
ttaataggaccttcaccctagaatccacctatataattacact |
18569081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 24848438 - 24848475
Alignment:
| Q |
20 |
tgaggcacttaatagaaccttcaccctagaatccacct |
57 |
Q |
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| T |
24848438 |
tgagggacttaatagaaccctcaccctagaatccacct |
24848475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 24847819 - 24847783
Alignment:
| Q |
20 |
tgaggcacttaatagaaccttcaccctagaatccacc |
56 |
Q |
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| T |
24847819 |
tgagggacttaatagaaccctcaccctagaatccacc |
24847783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 4402299 - 4402335
Alignment:
| Q |
20 |
tgaggcacttaatagaaccttcaccctagaatccacc |
56 |
Q |
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| T |
4402299 |
tgagggacttaatagaaccctcaccctagaatccacc |
4402335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 4706968 - 4707004
Alignment:
| Q |
20 |
tgaggcacttaatagaaccttcaccctagaatccacc |
56 |
Q |
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| T |
4706968 |
tgagggacttaatagaaccctcaccctagaatccacc |
4707004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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