View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_9 (Length: 489)
Name: NF9388A_low_9
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 27 - 489
Target Start/End: Original strand, 29104100 - 29104550
Alignment:
| Q |
27 |
aatctgcaagagtaatgagatactgcattgtttcctttgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttcaatattgtaga |
126 |
Q |
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| T |
29104100 |
aatctgcaagagtaatgagatactgcattgtttcctctgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttcaatattgtaga |
29104199 |
T |
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| Q |
127 |
ctcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctattgaattaaacgagaaaatt |
226 |
Q |
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| T |
29104200 |
ctcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctgttgaattaaacgagaaaatt |
29104299 |
T |
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| Q |
227 |
gattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcag |
326 |
Q |
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| T |
29104300 |
gattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaagcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcag |
29104399 |
T |
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| Q |
327 |
gaaatctgaaaagcaaaatagctccattcttagaaatctcagcaaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgca |
426 |
Q |
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| T |
29104400 |
gaaatcttaaaagtaaaatagctccatccttagaaatctcagcaaaacaagcttct------------ttgatggaattcgaagcgaagattcgatcgca |
29104487 |
T |
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| Q |
427 |
gaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaactgtt |
489 |
Q |
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| T |
29104488 |
gaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcctctaaccaactgtt |
29104550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 44 - 485
Target Start/End: Original strand, 29089856 - 29090285
Alignment:
| Q |
44 |
agatactgcattgtttcctttgtcagggaatgaactccgccgaaatttgccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaa |
143 |
Q |
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| T |
29089856 |
agatattgcattgtttgcgttgtaagggaatgaataccgccgaaattcgccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaa |
29089955 |
T |
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| Q |
144 |
gatttcgtacacactcgattaatcgatgttgcgaattatatgcttgagatttaacgactgctattgaattaaacgagaaaattgattcaatctccggcaa |
243 |
Q |
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| T |
29089956 |
tatttcttacagattcaacgagtctttgttgtgaattatatgcttgagatttaacaccagaggttgaattgaaagagaaaatcgattcaacctccggtaa |
29090055 |
T |
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| Q |
244 |
caacacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctccggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaa |
343 |
Q |
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| T |
29090056 |
caacatggtgattgtggcatacatatcaagcaaacggaaaatcttctccggtgtccatttctttgttttcgcaacgaattcaggaaatcgtaagagaaga |
29090155 |
T |
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| Q |
344 |
atagctccat-tcttagaaatctcagcaaaacaagcttctttgatggaattattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccg |
442 |
Q |
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||||||||| |||| ||||| ||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
29090156 |
gtagctccatctctt-gaaatttcaccaaaacaagcttct------------ctgatggaattcgaagcgaaaattcgttcgcagaggtttctctctcca |
29090242 |
T |
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| Q |
443 |
gcgaagagcgtcctcactgagatcttaaccgcttctaaccaac |
485 |
Q |
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| ||||| || ||||||||||||||||| || |||||||||| |
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| T |
29090243 |
gaaaagagtgttctcactgagatcttaactgcctctaaccaac |
29090285 |
T |
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