View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9388A_low_90 (Length: 311)
Name: NF9388A_low_90
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9388A_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 1702342 - 1702066
Alignment:
| Q |
9 |
agcatagatatccaaagactccaagattaagataattaggagtggaaccaaacagaatttcattaggacatttgtttttaagatgtgttgttgtcatgcg |
108 |
Q |
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| T |
1702342 |
agcacagacatccaaagactcgaagattaagataattaggagtggaaccaaacagaatttcatgaggacatttgtttttaagatgtgttgttggcatgcg |
1702243 |
T |
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| Q |
109 |
atttattaaatacacagacttttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacga |
208 |
Q |
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| T |
1702242 |
atttattaaatacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacga |
1702143 |
T |
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| Q |
209 |
tgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatttaccatgagagttaag |
285 |
Q |
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| T |
1702142 |
tgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatagtgagatataccatgagagttaag |
1702066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 255
Target Start/End: Complemental strand, 5400950 - 5400832
Alignment:
| Q |
137 |
gcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaataccaatatgtt |
236 |
Q |
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| T |
5400950 |
gcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaatgccaatgtgtt |
5400851 |
T |
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| Q |
237 |
cgggagtgtacggtgggct |
255 |
Q |
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| T |
5400850 |
caggagtataaggtgggct |
5400832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 255
Target Start/End: Complemental strand, 3541925 - 3541807
Alignment:
| Q |
137 |
gcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaataccaatatgtt |
236 |
Q |
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||||||||||||||| |||| || ||| ||||||||| | || ||||| | |||||||||||||| || ||||||||||| ||||| ||||| |||| |
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| T |
3541925 |
gcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaatgccaatgtgtt |
3541826 |
T |
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| Q |
237 |
cgggagtgtacggtgggct |
255 |
Q |
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| T |
3541825 |
caggagtataaggtgggct |
3541807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 26592278 - 26592339
Alignment:
| Q |
191 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgg |
252 |
Q |
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||||| |||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
26592278 |
gtttcgactatatggcaatgtttgcgttctgcaatgccaatatgttcaggagtgtaaggtgg |
26592339 |
T |
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