View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9388A_low_98 (Length: 303)

Name: NF9388A_low_98
Description: NF9388A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9388A_low_98
NF9388A_low_98
[»] chr5 (2 HSPs)
chr5 (14-297)||(28385281-28385564)
chr5 (17-297)||(12540632-12540912)
[»] chr7 (1 HSPs)
chr7 (14-297)||(3417476-3417759)
[»] chr2 (3 HSPs)
chr2 (14-295)||(13448312-13448593)
chr2 (14-295)||(13440149-13440430)
chr2 (14-229)||(13454849-13455064)
[»] chr4 (4 HSPs)
chr4 (14-229)||(48958159-48958377)
chr4 (18-295)||(48965278-48965555)
chr4 (15-184)||(48961353-48961525)
chr4 (14-88)||(48974265-48974339)
[»] chr6 (1 HSPs)
chr6 (15-154)||(12483411-12483556)
[»] scaffold0536 (1 HSPs)
scaffold0536 (14-140)||(6457-6586)
[»] chr8 (1 HSPs)
chr8 (14-229)||(12641427-12641645)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 28385564 - 28385281
Alignment:
Q  14 gaaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggt 113  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385564 gaaagggaaagaagatgagatcgaagaagagaaagaaaagtggctgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggt 28385465  T
Q  114 tgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  28385464 tgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggagggaactcaattgtagaggctgttggcgcgggagttc 28385365  T
Q  214 caatgataacgtggccttgtcatgcagatcacttcagcaatgagaaattgataacaacagtccgaagaattggagtggaagtag 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28385364 caatgataacgtggccttgtcatgcagatcacttcagcaatgagaaattgataacaacagtccgaagaattggagtggaagtag 28385281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 12540912 - 12540632
Alignment:
Q  17 agggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgg 116  Q
    |||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || || |||||||||    
T  12540912 agggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgg 12540813  T
Q  117 gccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaa 216  Q
    |||||||| |||  |||||||||| |||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||| |||||||||||||    
T  12540812 gccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagttccaa 12540713  T
Q  217 tgataacgtggccttgtcatgcagatcacttcagcaatgagaaattgataacaacagtccgaagaattggagtggaagtag 297  Q
    ||||||||||||| ||||||| |||||||||   ||| |||||| | ||||||   |||||| |||||||||| |||||||    
T  12540712 tgataacgtggccgtgtcatggagatcacttattcaacgagaaactaataacacaggtccgaggaattggagtagaagtag 12540632  T

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Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 3417476 - 3417759
Alignment:
Q  14 gaaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggt 113  Q
    |||||| ||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  | ||||||    
T  3417476 gaaaggaaaagaagatgagaacgaagaagagaaagaaaagtggttgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggt 3417575  T
Q  114 tgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttc 213  Q
    ||||||||||| |||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||||| |||| || |||||||| || |||||||    
T  3417576 tgggccccacaggttcagatattgagccaccctgcggtagggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagttc 3417675  T
Q  214 caatgataacgtggccttgtcatgcagatcacttcagcaatgagaaattgataacaacagtccgaagaattggagtggaagtag 297  Q
    ||||||||||||||||  |||||| |||||| ||   |||||||||| | ||||||  ||||||| ||||||||||||||||||    
T  3417676 caatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagtccgaggaattggagtggaagtag 3417759  T

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Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 13448593 - 13448312
Alignment:
Q  14 gaaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggt 113  Q
    |||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||||| |||||||| || || ||||||||||| || || ||||||    
T  13448593 gaaagggaaagaagatgagagcgaagaagagaaagaaaagtggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggt 13448494  T
Q  114 tgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttc 213  Q
    ||||||||||| |||  |||||||||| ||||||| |||||||||||| |||| |||||||||||||||||||  ||||| |||||| | ||||||||||    
T  13448493 tgggccccacaggttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagttc 13448394  T
Q  214 caatgataacgtggccttgtcatgcagatcacttcagcaatgagaaattgataacaacagtccgaagaattggagtggaagt 295  Q
    ||||||||||||||||   ||||| |||||| |||  |||||||||| ||||||||  | ||||| |||||||||| |||||    
T  13448393 caatgataacgtggccggttcatggagatcaattctacaatgagaaactgataacacaattccgaggaattggagttgaagt 13448312  T

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Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 295
Target Start/End: Complemental strand, 13440430 - 13440149
Alignment:
Q  14 gaaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggt 113  Q
    ||||||||||||||||||||  || || ||||||||||||||| |||| |||||||| || |||||||||||| | | || |||||| || || | ||||    
T  13440430 gaaagggaaagaagatgagagtgaggaagagaaagaaaagtggttgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggt 13440331  T
Q  114 tgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttc 213  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||  ||||| | ||||||||||    
T  13440330 tgggccccacaagttaagatattgagccaccctgcggtggggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagttc 13440231  T
Q  214 caatgataacgtggccttgtcatgcagatcacttcagcaatgagaaattgataacaacagtccgaagaattggagtggaagt 295  Q
    ||||||||||||||||   ||||| |||||| |||  ||| |||||| || |||||  | | ||| ||||||||||||||||    
T  13440230 caatgataacgtggccggttcatggagatcaattctacaacgagaaactggtaacacaatttcgaggaattggagtggaagt 13440149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 13455064 - 13454849
Alignment:
Q  14 gaaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggt 113  Q
    |||||||||||||||||||| |||||| |||||| |||||||| |||||||||||||||| |||| |||||| |  || |||||||| || || ||||||    
T  13455064 gaaagggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggt 13454965  T
Q  114 tgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttc 213  Q
    |||||||||||||||  |||||||||  ||||||| |||||||||||| |||| |||||||||||||||||||| ||||| |||||| ||  ||||||||    
T  13454964 tgggccccacaagttaagatattgagtcaccctgcagtggggggatttatgacgcattgcggggggaactcaatcgtagaggctgttagcatgggagttc 13454865  T
Q  214 caatgataacgtggcc 229  Q
    ||||||||||||||||    
T  13454864 caatgataacgtggcc 13454849  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 48958377 - 48958159
Alignment:
Q  14 gaaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattggaaagaag---ggtttcataatcagg 110  Q
    ||||||||||||||| ||||  ||||| ||||||| ||||||| ||||||| ||||| || |||||||||||||||||||||   ||||| || || |||    
T  48958377 gaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagg 48958278  T
Q  111 ggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggag 210  Q
    || ||||||||||||||| ||||  ||||| ||  ||| ||||| | |||| |||||||||||||| ||||||| | ||| || |||||| ||||||| |    
T  48958277 gggtgggccccacaagttttgattctgagccacattgccgtgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcggggg 48958178  T
Q  211 ttccaatgataacgtggcc 229  Q
    |||||||||| ||||||||    
T  48958177 ttccaatgatcacgtggcc 48958159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 48965555 - 48965278
Alignment:
Q  18 gggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttggg 117  Q
    |||||||| |||||||  ||||| |||||  |||||||| | || |||||||| || |||||||||||||||||||||||||| || || ||||||||||    
T  48965555 gggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagggattcgaagagagaaacattggaaagaagggtttgattattaggggttggg 48965456  T
Q  118 ccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggagttccaat 217  Q
    | || || ||||||||  ||||| |||| || ||||| |  ||| |||| ||||| ||  ||||||| |  || || |||||||| ||||| ||||| ||    
T  48965455 ctccgcaggttctgattctgagccaccccgctgtgggtgcctttatgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgat 48965356  T
Q  218 gataacgtggccttgtcatgcagatcacttcagcaatgagaaattgataacaacagtccgaagaattggagtggaagt 295  Q
    ||| || |||||||  |||| ||| || |||  ||| || ||| ||||||||  ||| ||| | ||||||||||||||    
T  48965355 gattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtggaagt 48965278  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 48961525 - 48961353
Alignment:
Q  15 aaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattgga---aagaagggtttcataatcaggg 111  Q
    ||||||||||  ||||||| |||||| |||||||| |||||| ||||||| |||||||| ||||||||||||| |   ||||||||||| || || | ||    
T  48961525 aaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaagg 48961426  T
Q  112 gttgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggggggaactc 184  Q
    | ||||||||||||||| ||||  || || || | |||||||| |  ||| |||| ||||||||| |||||||    
T  48961425 ggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgcattgcgggtggaactc 48961353  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 48974339 - 48974265
Alignment:
Q  14 gaaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattgg 88  Q
    |||||||||||| ||||||| | | |||||||| ||||||||| |||| ||||||||||| ||||| || |||||    
T  48974339 gaaagggaaagaggatgagagcaatgacgagaacgaaaagtggatgccaaagggatttgaagagaggaatattgg 48974265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 12483411 - 12483556
Alignment:
Q  15 aaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattgga------aagaagggtttcataatca 108  Q
    |||||||| |||||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||| ||      |||| |||||| || ||||    
T  12483411 aaagggaaggaagatgagagcgatgaggagaaagaaaagtggttgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatca 12483510  T
Q  109 ggggttgggccccacaagttctgatattgagcaaccctgcggtggg 154  Q
    |||| ||||| ||||| || ||||| |||||| ||||||| |||||    
T  12483511 gggggtgggcaccacaggtactgattttgagccaccctgcagtggg 12483556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 6457 - 6586
Alignment:
Q  14 gaaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattgga---aagaagggtttcataatcagg 110  Q
    ||||||||||||||||||||  ||||| ||||||| ||| ||| |||| |||||||| || |||||||| || |||   ||||||||||| || || |||    
T  6457 gaaagggaaagaagatgagagtgaagaggagaaaggaaaatggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattagg 6556  T
Q  111 ggttgggccccacaagttctgatattgagc 140  Q
    |||||||| ||||||||| |||| ||||||    
T  6557 ggttgggctccacaagttatgattttgagc 6586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 12641427 - 12641645
Alignment:
Q  14 gaaagggaaagaagatgagaccgaagacgagaaagaaaagtggctgccgaagggatttgaggagagaaacattgga---aagaagggtttcataatcagg 110  Q
    |||||||||| |||||||||  ||||| ||||||||||||||| |||| || ||||| || ||||||||  ||| |   ||||| ||||| || || |||    
T  12641427 gaaagggaaaaaagatgagagtgaagaggagaaagaaaagtggttgcctaaaggattcgaagagagaaatgttgaaaataagaaaggttttatcattagg 12641526  T
Q  111 ggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggggggaactcaattgtagaagctgttggcgcgggag 210  Q
    |  ||||||||||||||  |||| || ||| || |||| ||||| | |||  |||| |||||||||  ||||||  | ||||| |||||| | || ||      
T  12641527 gagtgggccccacaagtaatgattttaagccacgctgctgtgggtgcattcatgacgcattgcgggtcgaactccttggtagaggctgttagtgcaggga 12641626  T
Q  211 ttccaatgataacgtggcc 229  Q
    |||||||||| ||||||||    
T  12641627 ttccaatgatcacgtggcc 12641645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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